Atomistry » Chlorine » PDB 5i1t-5ibn » 5i4x
Atomistry »
  Chlorine »
    PDB 5i1t-5ibn »
      5i4x »

Chlorine in PDB 5i4x: Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours

Enzymatic activity of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours

All present enzymatic activity of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours:
3.2.1.17;

Protein crystallography data

The structure of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours, PDB code: 5i4x was solved by M.V.Hosur, T.Raskar, S.Khavnekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.73 / 1.61
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.840, 78.840, 36.840, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours (pdb code 5i4x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours, PDB code: 5i4x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5i4x

Go back to Chlorine Binding Sites List in 5i4x
Chlorine binding site 1 out of 2 in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:19.8
occ:0.46
O A:URE205 3.3 22.3 1.0
N A:GLY71 3.3 22.1 1.0
CA A:PRO70 3.8 18.4 1.0
O A:HOH419 3.8 32.7 1.0
O A:HOH329 3.9 30.1 1.0
N1 A:URE205 3.9 17.9 1.0
C A:URE205 4.0 19.9 1.0
C A:PRO70 4.1 18.8 1.0
CA A:GLY71 4.2 22.1 1.0
CB A:PRO70 4.6 21.2 1.0
O A:HOH394 4.7 25.0 1.0
O A:THR69 4.8 16.9 1.0
N A:PRO70 4.9 16.6 1.0

Chlorine binding site 2 out of 2 in 5i4x

Go back to Chlorine Binding Sites List in 5i4x
Chlorine binding site 2 out of 2 in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:22.9
occ:1.00
N1 A:URE203 3.3 22.1 1.0
O A:HOH325 3.4 29.6 1.0
N2 A:URE203 3.5 20.1 1.0
O A:HOH328 3.6 19.9 1.0
CA A:GLU7 3.7 15.7 1.0
CG A:GLU7 3.8 14.6 1.0
C A:URE203 3.9 20.4 1.0
O A:HOH415 3.9 37.6 1.0
CB A:GLU7 4.0 14.2 1.0
N A:GLU7 4.5 14.0 1.0
CB A:ALA10 4.6 15.3 1.0
O A:GLU7 4.6 14.9 1.0
C A:GLU7 4.7 12.9 1.0
O A:CYS6 4.8 13.2 1.0
C A:CYS6 4.9 12.1 1.0
CD A:GLU7 5.0 17.2 1.0

Reference:

T.Raskar, S.Khavnekar, M.Hosur. Time-Dependent X-Ray Diffraction Studies on Urea/Hen Egg White Lysozyme Complexes Reveal Structural Changes That Indicate Onset of Denaturation Sci Rep V. 6 32277 2016.
ISSN: ESSN 2045-2322
PubMed: 27573790
DOI: 10.1038/SREP32277
Page generated: Fri Jul 26 09:08:40 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy