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Chlorine in PDB 5i4x: Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours

Enzymatic activity of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours

All present enzymatic activity of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours:
3.2.1.17;

Protein crystallography data

The structure of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours, PDB code: 5i4x was solved by M.V.Hosur, T.Raskar, S.Khavnekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.73 / 1.61
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.840, 78.840, 36.840, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours (pdb code 5i4x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours, PDB code: 5i4x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5i4x

Go back to Chlorine Binding Sites List in 5i4x
Chlorine binding site 1 out of 2 in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:19.8
occ:0.46
O A:URE205 3.3 22.3 1.0
N A:GLY71 3.3 22.1 1.0
CA A:PRO70 3.8 18.4 1.0
O A:HOH419 3.8 32.7 1.0
O A:HOH329 3.9 30.1 1.0
N1 A:URE205 3.9 17.9 1.0
C A:URE205 4.0 19.9 1.0
C A:PRO70 4.1 18.8 1.0
CA A:GLY71 4.2 22.1 1.0
CB A:PRO70 4.6 21.2 1.0
O A:HOH394 4.7 25.0 1.0
O A:THR69 4.8 16.9 1.0
N A:PRO70 4.9 16.6 1.0

Chlorine binding site 2 out of 2 in 5i4x

Go back to Chlorine Binding Sites List in 5i4x
Chlorine binding site 2 out of 2 in the Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Exploring Onset of Lysozyme Denaturation By Urea - Soak Period 2 Hours within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:22.9
occ:1.00
N1 A:URE203 3.3 22.1 1.0
O A:HOH325 3.4 29.6 1.0
N2 A:URE203 3.5 20.1 1.0
O A:HOH328 3.6 19.9 1.0
CA A:GLU7 3.7 15.7 1.0
CG A:GLU7 3.8 14.6 1.0
C A:URE203 3.9 20.4 1.0
O A:HOH415 3.9 37.6 1.0
CB A:GLU7 4.0 14.2 1.0
N A:GLU7 4.5 14.0 1.0
CB A:ALA10 4.6 15.3 1.0
O A:GLU7 4.6 14.9 1.0
C A:GLU7 4.7 12.9 1.0
O A:CYS6 4.8 13.2 1.0
C A:CYS6 4.9 12.1 1.0
CD A:GLU7 5.0 17.2 1.0

Reference:

T.Raskar, S.Khavnekar, M.Hosur. Time-Dependent X-Ray Diffraction Studies on Urea/Hen Egg White Lysozyme Complexes Reveal Structural Changes That Indicate Onset of Denaturation Sci Rep V. 6 32277 2016.
ISSN: ESSN 2045-2322
PubMed: 27573790
DOI: 10.1038/SREP32277
Page generated: Fri Jul 26 09:08:40 2024

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