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Chlorine in PDB 5idy: Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp

Protein crystallography data

The structure of Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp, PDB code: 5idy was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.720, 109.720, 111.040, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 17.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp (pdb code 5idy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp, PDB code: 5idy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5idy

Go back to Chlorine Binding Sites List in 5idy
Chlorine binding site 1 out of 2 in the Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:71.2
occ:1.00
NH1 A:ARG212 3.1 71.0 1.0
NH2 A:ARG213 3.2 70.3 1.0
NE2 A:GLN202 3.2 75.1 1.0
NH1 A:ARG213 3.3 72.1 1.0
CZ A:ARG213 3.7 68.7 1.0
CD A:GLN202 4.2 75.1 1.0
CD1 A:LEU209 4.3 62.5 1.0
CZ A:ARG212 4.3 66.3 1.0
OE1 A:GLN202 4.4 76.2 1.0
CD A:ARG212 4.6 59.5 1.0
NE A:ARG212 5.0 64.1 1.0
NE A:ARG213 5.0 63.3 1.0

Chlorine binding site 2 out of 2 in 5idy

Go back to Chlorine Binding Sites List in 5idy
Chlorine binding site 2 out of 2 in the Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:61.7
occ:1.00
NH2 B:ARG213 3.1 64.3 1.0
NH1 B:ARG212 3.5 66.0 1.0
NE2 B:GLN202 3.7 60.2 1.0
CZ B:ARG213 3.9 62.1 1.0
NH1 B:ARG213 3.9 61.9 1.0
OE1 B:GLN202 4.4 65.9 1.0
CD B:ARG212 4.4 54.9 1.0
CD1 B:LEU209 4.4 55.2 1.0
CD B:GLN202 4.5 63.1 1.0
CZ B:ARG212 4.6 63.0 1.0
NE B:ARG212 4.9 58.9 1.0

Reference:

S.J.Mayclin, J.Abendroth, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Oxidoreductase From Burkholderia Vietnamiensis in Complex with Nadp To Be Published.
Page generated: Fri Jul 26 09:16:26 2024

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