Chlorine in PDB 5ikj: Structure of CLR2 Bound to the CLR1 C-Terminus

The structure of Structure of CLR2 Bound to the CLR1 C-Terminus, PDB code: 5ikj was solved by Y.Pfister, T.Schalch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.33 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	103.499, 103.499, 135.090, 90.00, 90.00, 120.00
R / Rfree (%)	21.4 / 24.3

The structure of Structure of CLR2 Bound to the CLR1 C-Terminus also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Chlorine atom in the Structure of CLR2 Bound to the CLR1 C-Terminus (pdb code 5ikj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of CLR2 Bound to the CLR1 C-Terminus, PDB code: 5ikj:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of CLR2 Bound to the CLR1 C-Terminus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of CLR2 Bound to the CLR1 C-Terminus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl602 b:57.6 occ:1.00 HD1 A:HIS36 2.6 79.9 1.0 H A:LEU136 2.6 77.4 1.0 O A:HOH764 2.7 61.5 1.0 HD12 A:LEU136 3.2 77.2 1.0 HB2 A:HIS36 3.2 80.4 1.0 HB2 A:LEU136 3.2 71.0 1.0 HG A:LEU136 3.3 78.0 1.0 HD3 A:ARG45 3.3 86.1 1.0 HA A:HIS36 3.4 74.9 1.0 HD2 A:ARG45 3.4 86.1 1.0 ND1 A:HIS36 3.4 66.6 1.0 HD21 A:ASN41 3.4 74.4 1.0 N A:LEU136 3.5 64.5 1.0 HA A:SER135 3.5 70.7 1.0 CD A:ARG45 3.8 71.8 1.0 CG A:LEU136 3.8 65.0 1.0 CB A:HIS36 3.8 67.0 1.0 CB A:LEU136 3.9 59.2 1.0 CD1 A:LEU136 3.9 64.4 1.0 OD1 A:ASN41 4.0 69.3 1.0 CA A:HIS36 4.0 62.4 1.0 CG A:HIS36 4.1 65.7 1.0 ND2 A:ASN41 4.1 62.0 1.0 HH11 A:ARG45 4.2 83.3 1.0 OG A:SER135 4.2 67.4 1.0 HD11 A:LEU136 4.3 77.2 1.0 CA A:LEU136 4.3 68.3 1.0 CA A:SER135 4.3 58.9 1.0 C A:SER135 4.4 61.7 1.0 CG A:ASN41 4.4 66.7 1.0 CE1 A:HIS36 4.5 62.6 1.0 NE A:ARG45 4.6 80.4 1.0 N A:HIS36 4.6 64.3 1.0 H A:HIS36 4.6 77.2 1.0 HD13 A:LEU136 4.6 77.2 1.0 NH1 A:ARG45 4.7 69.5 1.0 HB3 A:LEU136 4.7 71.0 1.0 HB3 A:HIS36 4.7 80.4 1.0 HE1 A:HIS36 4.7 75.1 1.0 O A:HOH710 4.7 64.3 1.0 CB A:SER135 4.8 58.2 1.0 HD22 A:ASN41 4.8 74.4 1.0 HG A:SER135 4.8 80.9 1.0 O A:HOH723 4.8 50.2 1.0 HB2 A:SER135 4.9 69.8 1.0 CZ A:ARG45 4.9 66.6 1.0 HA A:LEU136 4.9 82.0 1.0 CG A:ARG45 5.0 58.3 1.0

Chlorine binding site 2 out of 2 in the Structure of CLR2 Bound to the CLR1 C-Terminus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of CLR2 Bound to the CLR1 C-Terminus within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1301 b:72.2 occ:1.00 H B:ASP1185 2.6 75.2 1.0 HA B:TYR1184 3.1 67.6 1.0 HD1 B:TYR1184 3.4 81.8 1.0 N B:ASP1185 3.4 62.6 1.0 HD23 A:LEU508 3.4 78.4 1.0 HB3 A:LEU508 3.5 73.5 1.0 HB2 B:ASP1185 3.5 92.0 1.0 HB3 A:SER506 3.6 61.5 1.0 OG A:SER506 3.7 76.4 1.0 HB2 A:SER506 3.8 61.5 1.0 CA B:TYR1184 3.9 56.3 1.0 CB A:SER506 3.9 51.2 1.0 HB3 B:TYR1184 4.0 66.0 1.0 HB3 B:ASP1185 4.0 92.0 1.0 CB B:ASP1185 4.1 76.7 1.0 HG A:SER506 4.1 91.7 1.0 C B:TYR1184 4.2 61.5 1.0 CD1 B:TYR1184 4.2 68.2 1.0 HB2 A:SER509 4.3 73.0 1.0 CD2 A:LEU508 4.4 65.4 1.0 CA B:ASP1185 4.4 68.4 1.0 CB B:TYR1184 4.4 55.0 1.0 CB A:LEU508 4.4 61.3 1.0 H A:SER509 4.5 73.3 1.0 O B:LEU1183 4.5 51.5 1.0 HG A:LEU508 4.7 79.3 1.0 CG A:LEU508 4.8 66.1 1.0 HD22 A:LEU508 4.8 78.4 1.0 CG B:TYR1184 4.8 62.6 1.0 HB2 A:LEU508 4.8 73.5 1.0 N A:SER509 4.8 61.1 1.0 HA B:ASP1185 4.8 82.0 1.0 HD21 A:LEU508 5.0 78.4 1.0

G.Job, C.Brugger, T.Xu, B.R.Lowe, Y.Pfister, C.Qu, S.Shanker, J.I.Banos Sanz, J.F.Partridge, T.Schalch. Shrec Silences Heterochromatin Via Distinct Remodeling and Deacetylation Modules. Mol.Cell V. 62 207 2016.
ISSN: ISSN 1097-2765
PubMed: 27105116
DOI: 10.1016/J.MOLCEL.2016.03.016