Atomistry » Chlorine » PDB 5ilc-5iuy » 5ilf
Atomistry »
  Chlorine »
    PDB 5ilc-5iuy »
      5ilf »

Chlorine in PDB 5ilf: The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand

Enzymatic activity of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand

All present enzymatic activity of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand:
3.2.1.17;

Protein crystallography data

The structure of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand, PDB code: 5ilf was solved by A.Merlino, G.Ferraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.14 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.983, 77.983, 37.281, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 23.3

Other elements in 5ilf:

The structure of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand also contains other interesting chemical elements:

Platinum (Pt) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand (pdb code 5ilf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand, PDB code: 5ilf:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5ilf

Go back to Chlorine Binding Sites List in 5ilf
Chlorine binding site 1 out of 4 in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:28.1
occ:1.00
O A:HOH411 3.1 33.3 1.0
O A:HOH357 3.2 16.1 1.0
N A:THR69 3.2 19.7 1.0
O A:THR69 3.3 19.9 1.0
N A:ARG68 3.5 19.4 1.0
C A:GLY67 3.5 23.8 1.0
CA A:GLY67 3.6 19.4 1.0
C A:THR69 3.7 21.6 1.0
OG A:SER72 3.7 30.9 1.0
N A:GLY67 3.7 18.6 1.0
OD1 A:ASN65 3.7 20.0 1.0
CA A:THR69 3.8 20.5 1.0
O A:HOH368 4.1 22.7 1.0
C A:ARG68 4.1 21.5 1.0
CB A:THR69 4.2 21.4 1.0
O A:GLY67 4.2 22.9 1.0
CA A:ARG68 4.2 22.5 1.0
OD1 A:ASP66 4.2 16.9 1.0
N A:PRO70 4.6 22.7 1.0
NA A:NA208 4.7 25.7 1.0
OG1 A:THR69 4.8 17.7 1.0
C A:ASP66 4.8 17.9 1.0
O A:HOH347 4.9 21.9 0.5
CG A:ASN65 4.9 22.4 1.0
N A:ASP66 5.0 16.3 1.0
CB A:SER72 5.0 30.3 1.0

Chlorine binding site 2 out of 4 in 5ilf

Go back to Chlorine Binding Sites List in 5ilf
Chlorine binding site 2 out of 4 in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:28.6
occ:1.00
OG A:SER24 3.1 21.5 1.0
N A:GLY26 3.2 18.2 1.0
CB A:SER24 3.4 20.8 1.0
CA A:GLY26 3.5 18.8 1.0
CA A:GLN121 3.6 24.4 1.0
N A:GLN121 3.9 23.1 1.0
CD1 A:ILE124 3.9 29.7 1.0
CB A:GLN121 4.1 33.2 1.0
O A:VAL120 4.2 21.5 1.0
C A:VAL120 4.2 21.3 1.0
N A:LEU25 4.3 19.8 1.0
CG1 A:ILE124 4.3 26.1 1.0
CG2 A:VAL120 4.3 23.9 1.0
C A:LEU25 4.4 18.5 1.0
C A:SER24 4.4 19.9 1.0
NE2 A:GLN121 4.5 52.1 1.0
CA A:SER24 4.5 19.8 1.0
C A:GLY26 4.6 18.5 1.0
N A:ASN27 4.7 16.4 1.0
CA A:LEU25 4.8 20.3 1.0
C A:GLN121 4.8 23.1 1.0
O A:HOH401 4.8 55.4 1.0
O A:SER24 5.0 18.6 1.0

Chlorine binding site 3 out of 4 in 5ilf

Go back to Chlorine Binding Sites List in 5ilf
Chlorine binding site 3 out of 4 in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:26.9
occ:1.00
OH A:TYR23 3.0 16.5 1.0
O A:HOH332 3.4 21.7 1.0
CZ A:TYR23 3.7 16.9 1.0
CE2 A:TYR23 3.7 17.7 1.0
CA A:GLY104 4.2 20.2 1.0
O A:ARG21 4.6 22.0 1.0
CE1 A:TYR23 4.8 16.4 1.0
O A:HOH310 4.9 23.3 1.0
N A:GLY104 5.0 20.3 1.0
CD2 A:TYR23 5.0 18.4 1.0

Chlorine binding site 4 out of 4 in 5ilf

Go back to Chlorine Binding Sites List in 5ilf
Chlorine binding site 4 out of 4 in the The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The X-Ray Structure of the Adduct Formed in the Reaction Between Hen Egg White Lysozyme and Compound 4, A Platin(II) Compound Containing A O, S Bidentate Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:36.3
occ:1.00
N A:ILE88 3.2 21.9 1.0
O A:HOH317 3.5 33.7 1.0
CA A:ASP87 3.7 24.5 1.0
CG1 A:ILE88 3.7 18.8 1.0
NE2 A:HIS15 3.9 26.8 1.0
C A:ASP87 4.0 22.9 1.0
O A:SER86 4.1 27.9 1.0
CG A:ASP87 4.2 33.1 1.0
OD1 A:ASP87 4.2 32.2 1.0
CB A:ILE88 4.2 20.2 1.0
CB A:ALA11 4.2 23.1 1.0
CA A:ILE88 4.2 22.4 1.0
CG2 A:ILE88 4.2 19.4 1.0
CZ A:PHE3 4.3 22.7 1.0
NH1 A:ARG14 4.4 47.1 1.0
OD2 A:ASP87 4.5 39.0 1.0
CB A:ASP87 4.5 29.9 1.0
CD2 A:HIS15 4.5 25.3 1.0
CD1 A:ILE88 4.6 20.6 1.0
N A:ASP87 4.7 24.0 1.0
C A:SER86 4.9 23.9 1.0
CE1 A:HIS15 4.9 28.6 1.0
N A:THR89 5.0 21.4 1.0
CE2 A:PHE3 5.0 22.0 1.0

Reference:

J.Hildebrandt, N.Hafner, H.Gorls, D.Kritsch, G.Ferraro, M.Durst, I.B.Runnebaum, A.Merlino, W.Weigand. Platinum(II) O,S Complexes As Potential Metallodrugs Against Cisplatin Resistance. Dalton Trans V. 45 18876 2016.
ISSN: ESSN 1477-9234
PubMed: 27897281
DOI: 10.1039/C6DT01388K
Page generated: Sat Dec 12 11:50:59 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy