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Chlorine in PDB 5ipb: Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant

Protein crystallography data

The structure of Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant, PDB code: 5ipb was solved by K.M.Maize, B.C.Finzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.82 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.791, 46.498, 64.254, 90.00, 94.94, 90.00
R / Rfree (%) 16.4 / 19.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant (pdb code 5ipb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant, PDB code: 5ipb:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5ipb

Go back to Chlorine Binding Sites List in 5ipb
Chlorine binding site 1 out of 2 in the Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:15.1
occ:1.00
O A:HOH357 3.2 19.4 1.0
O A:HOH328 3.2 10.4 1.0
N A:SER107 3.4 14.9 1.0
ND2 A:ASN99 3.4 13.0 1.0
NE2 A:HIS114 3.5 13.5 1.0
ND2 A:ASN112 3.5 12.1 1.0
OD1 A:ASN112 3.6 14.1 1.0
OG A:SER107 3.6 20.4 1.0
CA A:GLN106 3.7 13.3 1.0
O A:HOH341 3.8 31.0 1.0
CB A:ASN99 3.9 10.1 1.0
CG A:GLN106 4.0 13.0 1.0
CG A:ASN112 4.0 10.8 1.0
C A:GLN106 4.1 17.1 1.0
CG A:ASN99 4.1 11.6 1.0
CB A:GLN106 4.3 15.1 1.0
O A:GLY105 4.4 18.9 1.0
CE1 A:HIS114 4.4 12.2 1.0
N A:VAL108 4.4 14.9 1.0
CD2 A:HIS114 4.4 13.3 1.0
CA A:SER107 4.4 17.0 1.0
O A:HOH372 4.5 29.2 1.0
CB A:SER107 4.5 17.7 1.0
O A:VAL108 4.7 14.4 1.0
N A:GLN106 4.7 13.8 1.0
O A:HOH391 4.8 12.5 1.0
O A:ASN99 4.9 13.8 1.0
C A:GLY105 4.9 16.8 1.0
C A:SER107 4.9 20.2 1.0
CA A:ASN99 5.0 8.1 1.0

Chlorine binding site 2 out of 2 in 5ipb

Go back to Chlorine Binding Sites List in 5ipb
Chlorine binding site 2 out of 2 in the Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1) H112N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:10.7
occ:1.00
O B:HOH317 3.2 9.0 1.0
N B:SER107 3.3 7.9 1.0
O B:HOH352 3.3 13.0 1.0
ND2 B:ASN99 3.3 12.5 1.0
NE2 B:HIS114 3.5 10.6 1.0
ND2 B:ASN112 3.5 7.4 1.0
OG B:SER107 3.5 16.4 1.0
OD1 B:ASN112 3.6 10.6 1.0
CA B:GLN106 3.7 8.7 1.0
O B:HOH369 3.8 27.1 1.0
CG B:GLN106 4.0 12.3 1.0
CG B:ASN112 4.0 8.3 1.0
CB B:ASN99 4.0 7.6 1.0
C B:GLN106 4.0 13.2 1.0
CG B:ASN99 4.1 12.6 1.0
N B:VAL108 4.2 9.6 1.0
CA B:SER107 4.3 8.4 1.0
CB B:SER107 4.3 12.6 1.0
CB B:GLN106 4.4 10.9 1.0
CE1 B:HIS114 4.4 12.9 1.0
CD2 B:HIS114 4.4 10.9 1.0
O B:GLY105 4.5 11.8 1.0
O B:VAL108 4.6 9.8 1.0
O B:HOH380 4.7 12.5 1.0
O B:HOH382 4.7 29.8 1.0
C B:SER107 4.8 10.3 1.0
N B:GLN106 4.8 8.4 1.0
O B:ASN99 5.0 10.7 1.0

Reference:

R.Shah, K.M.Maize, X.Zhou, B.C.Finzel, C.R.Wagner. Caught Before Released: Structural Mapping of the Reaction Trajectory For the Sofosbuvir Activating Enzyme, Human Histidine Triad Nucleotide Binding Protein 1 (HHINT1). Biochemistry V. 56 3559 2017.
ISSN: ISSN 1520-4995
PubMed: 28691797
DOI: 10.1021/ACS.BIOCHEM.7B00148
Page generated: Fri Jul 26 09:30:21 2024

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