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Chlorine in PDB 5ira: Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis

Protein crystallography data

The structure of Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis, PDB code: 5ira was solved by T.Heinisch, M.Jeschek, R.Reuter, C.Trindler, S.Panke, T.R.Ward, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.85 / 1.50
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.496, 57.496, 183.415, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 17.4

Other elements in 5ira:

The structure of Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis also contains other interesting chemical elements:

Ruthenium (Ru) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis (pdb code 5ira). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis, PDB code: 5ira:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5ira

Go back to Chlorine Binding Sites List in 5ira
Chlorine binding site 1 out of 2 in the Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:73.4
occ:0.50
CL1 A:9RU201 0.0 73.4 0.5
RU1 A:9RU201 2.2 39.6 0.5
C20 A:9RU201 2.5 40.2 0.5
C15 A:9RU201 3.0 33.0 0.5
N4 A:9RU201 3.2 37.8 0.5
N5 A:9RU201 3.4 46.7 0.5
C14 A:9RU201 3.6 28.6 0.5
C16 A:9RU201 3.6 31.0 0.5
C25 A:9RU201 3.8 28.6 0.0
C23 A:9RU201 4.1 69.8 0.0
C22 A:9RU201 4.2 39.6 0.5
C24 A:9RU201 4.3 64.1 0.0
CD1 A:LEU124 4.3 21.7 0.6
C21 A:9RU201 4.3 38.8 0.5
CL2 A:9RU201 4.4 47.7 0.5
C17 A:9RU201 4.8 27.7 0.5
CD2 A:LEU124 4.8 21.4 0.6
C13 A:9RU201 4.8 22.2 0.5

Chlorine binding site 2 out of 2 in 5ira

Go back to Chlorine Binding Sites List in 5ira
Chlorine binding site 2 out of 2 in the Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Expanding Nature'S Catalytic Repertoire -Directed Evolution of An Artificial Metalloenzyme For in Vivo Metathesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:47.7
occ:0.50
CL2 A:9RU201 0.0 47.7 0.5
RU1 A:9RU201 2.2 39.6 0.5
C31 A:9RU201 2.6 77.9 0.0
C20 A:9RU201 3.0 40.2 0.5
C30 A:9RU201 3.3 89.8 0.0
C31 A:9RU201 3.6 78.1 0.0
C23 A:9RU201 3.7 69.8 0.0
N5 A:9RU201 3.7 46.7 0.5
C18 A:9RU201 3.9 31.3 0.5
N4 A:9RU201 3.9 37.8 0.5
C15 A:9RU201 4.1 58.5 0.5
RU1 A:9RU201 4.1 58.2 0.5
C29 A:9RU201 4.2 90.9 0.0
C17 A:9RU201 4.4 27.7 0.5
CL1 A:9RU201 4.4 73.4 0.5
C16 A:9RU201 4.4 31.0 0.5
C21 A:9RU201 4.8 38.8 0.5
C24 A:9RU201 4.9 64.1 0.0
C14 A:9RU201 4.9 71.5 0.5
C30 A:9RU201 4.9 73.7 0.0
C22 A:9RU201 5.0 39.6 0.5

Reference:

M.Jeschek, R.Reuter, T.Heinisch, C.Trindler, J.Klehr, S.Panke, T.R.Ward. Directed Evolution of Artificial Metalloenzymes For in Vivo Metathesis. Nature V. 537 661 2016.
ISSN: ESSN 1476-4687
PubMed: 27571282
DOI: 10.1038/NATURE19114
Page generated: Fri Jul 26 09:33:35 2024

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