Atomistry » Chlorine » PDB 5j7g-5jed » 5j8s
Atomistry »
  Chlorine »
    PDB 5j7g-5jed »
      5j8s »

Chlorine in PDB 5j8s: Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A

Enzymatic activity of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A

All present enzymatic activity of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A:
1.16.3.1;

Protein crystallography data

The structure of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A, PDB code: 5j8s was solved by C.Pozzi, F.Di Pisa, S.Mangani, C.Bernacchioni, P.Turano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.77 / 1.50
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 185.010, 185.010, 185.010, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 17.9

Other elements in 5j8s:

The structure of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A (pdb code 5j8s). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A, PDB code: 5j8s:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 1 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:13.6
occ:0.25
 NE2 A:HIS169 3.1 15.7 1.0
CE1 A:HIS169 3.8 17.7 1.0
CD2 A:LEU165 3.9 13.9 1.0
CD2 A:HIS169 4.2 15.7 1.0

Chlorine binding site 2 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 2 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:23.0
occ:0.70
 O A:HOH315 2.8 34.1 1.0
N A:ASP87 3.1 13.1 1.0
O A:HOH640 3.1 31.5 1.0
N A:GLU88 3.7 13.1 1.0
CA A:ARG86 3.7 13.1 1.0
CB A:ARG86 3.9 13.2 1.0
C A:ARG86 3.9 12.8 1.0
CA A:ASP87 3.9 14.0 1.0
CB A:ASP87 4.0 14.5 1.0
O A:HOH404 4.0 45.5 1.0
O A:GLU88 4.1 13.2 1.0
CG A:GLU88 4.2 16.4 1.0
CG A:ARG86 4.3 13.1 1.0
C A:ASP87 4.3 14.1 1.0
O A:HOH482 4.4 32.6 1.0
OD2 A:ASP87 4.5 18.3 1.0
CG A:ASP87 4.6 15.0 1.0
OE2 A:GLU88 4.6 22.6 1.0
CA A:GLU88 4.7 13.3 1.0
NE A:ARG86 4.7 15.7 1.0
O A:HOH585 4.8 31.0 1.0
CB A:GLU88 4.9 14.4 1.0
C A:GLU88 4.9 13.2 1.0
CD A:GLU88 4.9 18.5 1.0

Chlorine binding site 3 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 3 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:20.7
occ:0.70
 O A:HOH598 2.8 29.9 1.0
OG1 A:THR105 3.1 13.2 1.0
O A:HOH401 3.1 16.4 1.0
NE2 A:GLN101 3.5 22.4 0.6
CG A:GLN101 3.6 17.7 0.6
CA A:LEU102 3.6 12.8 1.0
O A:GLN101 3.6 12.8 1.0
C A:GLN101 3.7 12.9 1.0
N A:LEU102 3.7 12.3 1.0
CB A:THR105 3.8 12.2 1.0
O A:HOH344 3.9 24.5 1.0
CD A:GLN101 4.1 20.3 0.6
CB A:GLN101 4.2 14.8 0.6
CB A:LEU102 4.3 13.9 1.0
CG2 A:THR105 4.4 12.9 1.0
CB A:GLN101 4.4 12.6 0.4
CD1 A:LEU102 4.4 16.4 1.0
CA A:GLN101 4.6 13.4 0.6
CA A:GLN101 4.7 12.6 0.4
O A:HOH639 4.7 19.8 1.0
O A:HOH352 4.7 42.4 1.0
O A:HOH459 4.8 24.3 1.0
C A:LEU102 4.8 12.5 1.0
O A:HOH557 4.9 51.2 1.0
O A:HOH504 4.9 22.8 1.0
O A:LEU102 5.0 11.7 1.0
CG A:LEU102 5.0 14.7 1.0

Chlorine binding site 4 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 4 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:16.2
occ:0.70
 O A:HOH529 3.0 18.1 1.0
O A:HOH501 3.1 29.4 1.0
O A:HOH655 3.1 35.0 1.0
O A:HOH420 3.3 35.3 1.0
ND2 A:ASN17 3.3 11.4 1.0
CB A:ASN17 3.7 10.5 1.0
CA A:ALA14 4.0 11.1 1.0
CG A:ASN17 4.0 11.0 1.0
O A:HOH656 4.0 42.0 1.0
CB A:VAL77 4.0 12.6 1.0
CB A:ALA14 4.2 11.4 1.0
O A:ALA14 4.3 11.2 1.0
CG2 A:VAL77 4.4 13.3 1.0
CG1 A:VAL77 4.4 13.7 1.0
C A:ALA14 4.6 11.2 1.0
O A:HOH363 4.7 15.6 1.0

Chlorine binding site 5 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 5 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:19.3
occ:1.00
 O A:HOH568 3.1 43.4 1.0
O A:HOH517 3.2 32.3 1.0
O A:HOH496 3.2 47.0 1.0
N A:TYR8 3.3 11.3 1.0
N A:ASN7 3.4 11.4 1.0
O A:TYR8 3.5 13.1 1.0
CD A:ARG5 3.5 12.1 1.0
CG A:ARG5 3.6 11.9 1.0
NE A:ARG5 3.6 12.4 1.0
O A:HOH485 3.8 21.5 1.0
C A:GLN6 3.9 11.7 1.0
CA A:GLN6 4.0 11.8 1.0
CA A:ASN7 4.0 11.4 1.0
C A:TYR8 4.1 11.8 1.0
N A:GLN6 4.1 11.3 1.0
CA A:TYR8 4.1 11.7 1.0
C A:ASN7 4.1 11.5 1.0
C A:ARG5 4.3 12.0 1.0
CB A:TYR8 4.4 11.6 1.0
O A:ARG5 4.5 12.8 1.0
O A:HOH632 4.5 28.6 1.0
CB A:ARG5 4.5 11.7 1.0
O A:GLN6 4.8 11.8 1.0
CZ A:ARG5 4.9 12.5 1.0

Chlorine binding site 6 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 6 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:16.1
occ:0.20
 CE1 A:HIS169 3.7 17.7 1.0
ND1 A:HIS169 4.5 17.9 1.0
NE2 A:HIS169 4.6 15.7 1.0
O A:HOH417 5.0 30.0 1.0

Chlorine binding site 7 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 7 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:22.6
occ:0.60
 O A:HOH580 2.9 41.0 1.0
O A:HOH555 3.0 43.8 1.0
O A:HOH596 3.0 31.9 1.0
N A:SER10 3.0 13.0 1.0
CB A:SER10 3.6 13.9 1.0
CA A:HIS9 3.8 12.9 1.0
CD2 A:HIS9 3.8 14.4 1.0
CG A:HIS9 3.8 14.0 1.0
C A:HIS9 3.9 13.3 1.0
O A:HOH517 3.9 32.3 1.0
ND1 A:HIS9 3.9 14.4 1.0
CA A:SER10 3.9 12.7 1.0
NE2 A:HIS9 3.9 15.3 1.0
CE1 A:HIS9 3.9 15.1 1.0
CB A:HIS9 4.4 12.9 1.0
O A:TYR8 4.4 13.1 1.0
O A:HOH568 4.5 43.4 1.0
N A:HIS9 4.9 12.4 1.0
O A:HOH534 4.9 42.5 1.0
OG A:SER10 4.9 14.5 0.8
O A:HOH556 4.9 35.4 1.0
O A:HOH565 5.0 43.1 1.0

Chlorine binding site 8 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 8 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:18.8
occ:0.70
 O A:HOH320 3.0 21.9 1.0
NE2 A:GLN108 3.2 15.2 1.0
NZ A:LYS115 3.2 13.1 0.2
O A:HOH511 3.2 53.9 1.0
CE A:LYS115 3.6 13.3 0.2
NZ A:LYS115 3.9 23.1 0.5
CD A:GLN108 4.1 14.4 1.0
OE1 A:GLN108 4.1 16.2 1.0
O A:HOH573 4.1 34.7 1.0
CD1 A:LEU111 4.3 12.9 1.0
CB A:LEU111 4.3 12.0 1.0
OD1 A:ASP112 4.7 14.8 1.0
CE A:LYS115 4.8 20.9 0.5
CG A:LEU111 4.8 12.3 1.0

Chlorine binding site 9 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 9 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:23.6
occ:0.70
 O A:HOH582 2.9 40.7 1.0
O A:HOH430 3.2 21.9 0.8
N A:ALA136 3.2 14.8 1.0
C A:GLU132 3.3 14.2 1.0
N A:TYR133 3.4 12.5 1.0
N A:GLU135 3.4 12.8 1.0
O A:SER131 3.4 15.9 1.0
CB A:GLU135 3.6 14.6 1.0
O A:GLU132 3.6 15.4 1.0
C A:SER131 3.7 14.4 1.0
C A:TYR133 3.7 12.8 1.0
CA A:GLU135 3.8 14.2 1.0
CA A:GLU132 3.8 14.4 1.0
N A:LEU134 3.8 12.4 1.0
N A:GLU132 3.8 14.5 1.0
CA A:TYR133 3.8 12.5 1.0
O A:GLU130 3.9 15.1 1.0
C A:GLU135 3.9 14.1 1.0
O A:HOH440 4.0 37.2 1.0
CB A:ALA136 4.1 16.1 1.0
O A:TYR133 4.2 13.0 1.0
CA A:ALA136 4.2 14.4 1.0
C A:LEU134 4.4 12.4 1.0
CG A:GLU135 4.4 15.6 1.0
O A:HOH410 4.5 31.3 1.0
CA A:SER131 4.6 14.2 0.5
CA A:SER131 4.6 14.2 0.5
CA A:LEU134 4.7 12.5 1.0
C A:GLU130 4.7 14.1 1.0
O A:HOH636 4.8 27.3 0.8
O A:HOH439 4.8 38.8 1.0
O A:LEU129 4.9 11.9 1.0
O A:HOH483 5.0 20.4 0.8

Chlorine binding site 10 out of 14 in 5j8s

Go back to Chlorine Binding Sites List in 5j8s
Chlorine binding site 10 out of 14 in the Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Iron-Free State of Rana Catesbeiana H' Ferritin Variant E57A/E136A/D140A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:50.8
occ:1.00
 O A:HOH576 3.1 41.4 1.0
O A:HOH435 3.2 23.7 1.0
CD A:LYS64 3.6 19.4 0.5
O A:HOH507 3.7 33.6 1.0
CE1 A:PHE128 3.7 12.4 1.0
O A:HOH462 3.9 18.0 1.0
CD A:GLU132 3.9 19.4 1.0
CG A:GLU132 3.9 17.2 1.0
CD A:LYS64 4.0 12.3 0.5
CG A:LYS64 4.0 17.0 0.5
OE2 A:GLU132 4.2 22.9 1.0
CE A:LYS64 4.2 13.1 0.5
CD1 A:PHE128 4.2 11.9 1.0
CG A:LYS64 4.2 12.3 0.5
OE1 A:GLU132 4.2 19.6 1.0
O A:HOH308 4.6 45.9 1.0
CE A:LYS64 4.7 19.4 0.5
CZ A:PHE128 4.9 12.5 1.0
NZ A:LYS64 4.9 14.3 0.5

Reference:

C.Bernacchioni, C.Pozzi, F.Di Pisa, S.Mangani, P.Turano. Ferroxidase Activity in Eukaryotic Ferritin Is Controlled By Accessory-Iron-Binding Sites in the Catalytic Cavity. Chemistry V. 22 16213 2016.
ISSN: ISSN 0947-6539
PubMed: 27650996
DOI: 10.1002/CHEM.201602842
Page generated: Fri Jul 26 09:49:45 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy