Atomistry » Chlorine » PDB 5jec-5jka » 5jgu
Atomistry »
  Chlorine »
    PDB 5jec-5jka »
      5jgu »

Chlorine in PDB 5jgu: Spin-Labeled T4 Lysozyme Construct R119V1

Enzymatic activity of Spin-Labeled T4 Lysozyme Construct R119V1

All present enzymatic activity of Spin-Labeled T4 Lysozyme Construct R119V1:
3.2.1.17;

Protein crystallography data

The structure of Spin-Labeled T4 Lysozyme Construct R119V1, PDB code: 5jgu was solved by A.R.Balo, H.Feyrer, O.P.Ernst, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.67 / 1.47
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.919, 59.919, 96.154, 90.00, 90.00, 120.00
R / Rfree (%) 15.1 / 17.5

Other elements in 5jgu:

The structure of Spin-Labeled T4 Lysozyme Construct R119V1 also contains other interesting chemical elements:

Potassium (K) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Spin-Labeled T4 Lysozyme Construct R119V1 (pdb code 5jgu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Spin-Labeled T4 Lysozyme Construct R119V1, PDB code: 5jgu:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5jgu

Go back to Chlorine Binding Sites List in 5jgu
Chlorine binding site 1 out of 3 in the Spin-Labeled T4 Lysozyme Construct R119V1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Spin-Labeled T4 Lysozyme Construct R119V1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:15.2
occ:1.00
O A:HOH597 3.0 13.3 1.0
N A:ARG145 3.2 6.1 1.0
N A:ASN144 3.3 7.0 1.0
C A:THR142 3.4 7.3 1.0
CA A:THR142 3.5 6.8 1.0
CB A:THR142 3.6 6.2 1.0
O A:THR142 3.7 7.0 1.0
CB A:ASN144 3.7 6.7 1.0
N A:PRO143 3.7 5.9 1.0
CA A:ASN144 3.8 7.6 1.0
CB A:ARG145 3.8 8.1 1.0
C A:ASN144 4.0 6.9 1.0
CA A:ARG145 4.1 7.8 1.0
CG2 A:THR142 4.2 8.3 1.0
CD A:PRO143 4.2 7.3 1.0
C A:PRO143 4.2 7.2 1.0
CA A:PRO143 4.6 6.6 1.0
CG A:ASN144 4.7 11.1 1.0
O A:HOH342 4.8 14.2 1.0
OG1 A:THR142 4.8 8.1 1.0
N A:THR142 4.9 7.1 1.0

Chlorine binding site 2 out of 3 in 5jgu

Go back to Chlorine Binding Sites List in 5jgu
Chlorine binding site 2 out of 3 in the Spin-Labeled T4 Lysozyme Construct R119V1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Spin-Labeled T4 Lysozyme Construct R119V1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:19.1
occ:1.00
O A:HOH380 3.0 13.6 1.0
NZ A:LYS135 3.0 26.1 1.0
ND2 A:ASN132 3.2 13.8 1.0
CB A:ASN132 3.7 8.1 1.0
CA A:ASN132 3.8 7.6 1.0
CE A:LYS135 3.8 23.0 1.0
CG A:ASN132 3.9 10.8 1.0
CD A:LYS135 4.0 16.1 1.0
N A:ASN132 4.1 7.2 1.0
CG1 A:VAL131 4.2 10.9 1.0
CE A:MET120 4.4 16.1 1.0
O A:HOH495 4.6 26.1 1.0
C A:VAL131 4.6 8.5 1.0
O A:VAL131 4.8 10.2 1.0
O A:GLU128 4.8 8.6 1.0
CB A:VAL131 4.9 8.6 1.0
O A:HOH591 5.0 21.9 1.0

Chlorine binding site 3 out of 3 in 5jgu

Go back to Chlorine Binding Sites List in 5jgu
Chlorine binding site 3 out of 3 in the Spin-Labeled T4 Lysozyme Construct R119V1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Spin-Labeled T4 Lysozyme Construct R119V1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:15.9
occ:1.00
O A:HOH446 3.0 17.1 1.0
C A:LYS135 3.6 8.5 1.0
CA A:LYS135 3.8 7.0 1.0
N A:SER136 3.9 7.2 1.0
O A:LYS135 4.0 9.0 1.0
CB A:LYS135 4.0 9.6 1.0
ND2 A:ASN140 4.5 10.8 1.0
CA A:SER136 4.7 6.7 1.0
CG A:LYS135 4.8 12.7 1.0

Reference:

A.R.Balo, H.Feyrer, O.P.Ernst. Toward Precise Interpretation of Deer-Based Distance Distributions: Insights From Structural Characterization of V1 Spin-Labeled Side Chains. Biochemistry V. 55 5256 2016.
ISSN: ISSN 1520-4995
PubMed: 27532325
DOI: 10.1021/ACS.BIOCHEM.6B00608
Page generated: Sat Dec 12 11:53:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy