Chlorine in PDB 5jiu: The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide

All present enzymatic activity of The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide:
3.6.4.13;

The structure of The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide, PDB code: 5jiu was solved by S.K.Hong, K.-H.Kim, E.E.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.06 / 2.05
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	123.318, 123.318, 91.986, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 20.3

The binding sites of Chlorine atom in the The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide (pdb code 5jiu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide, PDB code: 5jiu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:38.0 occ:1.00 O A:HOH563 3.0 34.5 1.0 O A:HOH595 3.0 32.0 1.0 NE A:ARG150 3.1 24.4 1.0 NH2 A:ARG153 3.2 25.1 1.0 NH2 B:ARG153 3.7 30.0 1.0 O B:HOH600 3.8 39.2 1.0 CD A:ARG150 3.8 25.3 1.0 OE1 A:GLU339 3.9 32.5 1.0 CD A:ARG153 4.0 27.9 1.0 CG A:ARG150 4.0 27.1 1.0 CD A:GLU339 4.0 29.7 1.0 CZ A:ARG150 4.0 28.5 1.0 NH1 A:ARG150 4.1 28.6 1.0 OE2 A:GLU339 4.2 29.4 1.0 CZ B:ARG153 4.3 27.1 1.0 CZ A:ARG153 4.3 29.1 1.0 NE A:ARG153 4.6 25.4 1.0 NE B:ARG153 4.6 23.9 1.0 CD2 A:LEU154 4.6 27.1 1.0 CG A:GLU339 4.6 29.2 1.0 CG A:ARG153 4.7 29.4 1.0 O A:HOH560 4.8 32.6 1.0 CB A:ARG150 4.9 26.3 1.0 CG A:LEU154 5.0 26.0 1.0

Chlorine binding site 2 out of 2 in the The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Ranbpm/9 Ius-Spry Domain in Complex with Ddx- 4 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl401 b:36.6 occ:1.00 O B:HOH583 2.9 29.9 1.0 O B:HOH590 3.0 39.8 1.0 NE B:ARG150 3.1 26.8 1.0 NH1 B:ARG153 3.4 23.4 1.0 O A:HOH588 3.6 41.4 1.0 CD B:ARG150 3.8 24.1 1.0 NH1 A:ARG153 3.8 29.2 1.0 CD B:ARG153 3.9 28.3 1.0 CG B:ARG150 4.1 26.4 1.0 CZ B:ARG150 4.1 30.3 1.0 OE1 B:GLU339 4.1 32.3 1.0 CD B:GLU339 4.1 30.5 1.0 NH1 B:ARG150 4.1 29.7 1.0 OE2 B:GLU339 4.2 27.6 1.0 CZ A:ARG153 4.3 29.1 1.0 CZ B:ARG153 4.4 27.1 1.0 O A:HOH581 4.5 41.7 1.0 NE B:ARG153 4.6 23.9 1.0 NE A:ARG153 4.6 25.4 1.0 CD2 B:LEU154 4.7 28.2 1.0 CG B:GLU339 4.7 27.8 1.0 O B:HOH541 4.8 34.9 1.0 CB B:ARG150 4.9 26.6 1.0 CG B:LEU154 5.0 26.5 1.0

S.K.Hong, K.H.Kim, E.J.Song, E.E.Kim. Structural Basis For the Interaction Between the Ius-Spry Domain of Ranbpm and Ddx-4 in Germ Cell Development. J.Mol.Biol. V. 428 4330 2016.
ISSN: ESSN 1089-8638
PubMed: 27622290
DOI: 10.1016/J.JMB.2016.09.004