Chlorine in PDB 5jk0: Crystal Structure of Xerh Site-Specific Recombinase Bound to Difh Substrate: Pre-Cleavage Complex

Protein crystallography data

The structure of Crystal Structure of Xerh Site-Specific Recombinase Bound to Difh Substrate: Pre-Cleavage Complex, PDB code: 5jk0 was solved by A.Bebel, O.Barabas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.89 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.280, 153.200, 169.390, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Xerh Site-Specific Recombinase Bound to Difh Substrate: Pre-Cleavage Complex (pdb code 5jk0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Xerh Site-Specific Recombinase Bound to Difh Substrate: Pre-Cleavage Complex, PDB code: 5jk0:

Chlorine binding site 1 out of 1 in 5jk0

Go back to Chlorine Binding Sites List in 5jk0
Chlorine binding site 1 out of 1 in the Crystal Structure of Xerh Site-Specific Recombinase Bound to Difh Substrate: Pre-Cleavage Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Xerh Site-Specific Recombinase Bound to Difh Substrate: Pre-Cleavage Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:36.2
occ:1.00
O C:HOH569 3.1 25.5 1.0
N C:LEU326 3.3 23.5 1.0
N A:LEU326 3.4 26.8 1.0
CB C:LEU326 3.7 28.6 1.0
O C:HIS324 3.8 30.2 1.0
O A:HIS324 3.8 33.9 1.0
CB A:LEU326 4.0 29.2 1.0
CA A:ASP325 4.0 29.9 1.0
CA C:ASP325 4.1 26.7 1.0
CA C:LEU326 4.1 25.4 1.0
C C:ASP325 4.2 24.1 1.0
C A:ASP325 4.2 27.0 1.0
CA A:LEU326 4.3 27.1 1.0
OD1 A:ASP325 4.4 32.9 1.0
OD1 C:ASP325 4.6 25.7 1.0
C C:HIS324 4.6 30.9 1.0
C A:HIS324 4.6 32.5 1.0
N C:ASP325 4.8 28.4 1.0
N A:ASP325 4.8 30.5 1.0
N A:ILE327 4.9 26.8 1.0
N C:ILE327 4.9 23.8 1.0
CG A:ASP325 5.0 34.0 1.0
CG C:LEU326 5.0 29.9 1.0

Reference:

A.Bebel, E.Karaca, B.Kumar, W.M.Stark, O.Barabas. Structural Snapshots of Xer Recombination Reveal Activation By Synaptic Complex Remodeling and Dna Bending. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 28009253
DOI: 10.7554/ELIFE.19706
Page generated: Sat Dec 12 11:53:38 2020

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