Chlorine in PDB 5jke: Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3)

The structure of Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3), PDB code: 5jke was solved by U.Ohto, H.Ishida, T.Shimizu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.30 / 2.86
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.182, 141.776, 144.861, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 23.8

The binding sites of Chlorine atom in the Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3) (pdb code 5jke). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3), PDB code: 5jke:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:73.2 occ:1.00 OG B:SER100 3.0 69.6 1.0 NE1 B:TRP50 3.1 72.1 1.0 ND2 B:ASN217 3.3 64.9 1.0 OD1 B:ASN102 3.3 76.9 1.0 ND2 B:ASN219 3.4 76.3 1.0 CB B:SER100 3.6 75.6 1.0 CD1 B:TRP50 3.7 73.7 1.0 CB B:ASN219 3.9 73.0 1.0 OD1 B:ASN217 3.9 64.8 1.0 CD B:PRO101 4.0 73.8 1.0 CG B:ASN217 4.0 66.7 1.0 CA B:SER100 4.1 77.1 1.0 CG B:ASN102 4.1 76.4 1.0 CE1 B:PHE96 4.1 56.9 1.0 CG B:ASN219 4.2 70.5 1.0 CB B:ASN102 4.2 71.6 1.0 CE2 B:TRP50 4.3 69.8 1.0 CE1 B:PHE211 4.4 66.7 1.0 CD1 B:PHE96 4.5 56.4 1.0 N B:PRO101 4.7 75.9 1.0 N B:ASN102 4.8 75.8 1.0 CZ2 B:TRP50 4.8 72.4 1.0 C B:SER100 4.8 81.5 1.0 CZ B:PHE211 4.9 64.3 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human IZUMO1-Juno Complex (Crystal Form 3) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl303 b:62.4 occ:1.00 ND2 D:ASN219 3.1 61.6 1.0 NE1 D:TRP50 3.1 67.1 1.0 ND2 D:ASN217 3.2 69.9 1.0 OG D:SER100 3.3 63.2 1.0 OD1 D:ASN102 3.4 77.4 1.0 CB D:ASN219 3.7 71.5 1.0 OD1 D:ASN217 3.7 77.8 1.0 CD1 D:TRP50 3.9 65.2 1.0 CG D:ASN219 3.9 63.3 1.0 CG D:ASN217 3.9 69.7 1.0 CB D:SER100 3.9 63.9 1.0 CE1 D:PHE211 4.1 67.5 1.0 CE1 D:PHE96 4.1 66.4 1.0 CE2 D:TRP50 4.2 62.1 1.0 CG D:ASN102 4.3 67.8 1.0 CB D:ASN102 4.4 68.1 1.0 CD D:PRO101 4.4 78.1 1.0 CA D:SER100 4.4 65.5 1.0 CD1 D:PHE96 4.5 65.9 1.0 CZ D:PHE211 4.6 69.3 1.0 CZ2 D:TRP50 4.7 56.3 1.0 CA D:ASN219 5.0 69.6 1.0

U.Ohto, H.Ishida, E.Krayukhina, S.Uchiyama, N.Inoue, T.Shimizu. Structure of IZUMO1-Juno Reveals Sperm-Oocyte Recognition During Mammalian Fertilization Nature V. 534 566 2016.
ISSN: ESSN 1476-4687
PubMed: 27309808
DOI: 10.1038/NATURE18596