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Chlorine in PDB 5jkk: Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin

Enzymatic activity of Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin

All present enzymatic activity of Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin, PDB code: 5jkk was solved by M.Kuenzle, T.Beck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.37 / 1.60
Space group P 2 3
Cell size a, b, c (Å), α, β, γ (°) 180.980, 180.980, 180.980, 90.00, 90.00, 90.00
R / Rfree (%) 12.4 / 14.3

Other elements in 5jkk:

The structure of Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 17 atoms
Iron (Fe) 10 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin (pdb code 5jkk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin, PDB code: 5jkk:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5jkk

Go back to Chlorine Binding Sites List in 5jkk
Chlorine binding site 1 out of 2 in the Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:9.7
occ:1.00
FE A:FE202 2.5 27.4 0.5
NE2 F:HIS173 3.1 10.9 1.0
NE2 G:HIS173 3.2 12.5 1.0
NE2 C:HIS173 3.2 11.8 1.0
NE2 A:HIS173 3.2 12.3 1.0
CD2 A:LEU169 3.9 9.2 1.0
CD2 C:LEU169 3.9 8.5 1.0
CD2 F:LEU169 3.9 8.9 1.0
CD2 G:LEU169 4.0 8.5 1.0
CE1 C:HIS173 4.0 12.7 1.0
CE1 G:HIS173 4.0 12.1 1.0
CE1 F:HIS173 4.0 13.0 1.0
CD2 A:HIS173 4.1 12.7 1.0
CD2 F:HIS173 4.1 12.1 1.0
CD2 G:HIS173 4.1 11.8 1.0
CE1 A:HIS173 4.1 12.0 1.0
CD2 C:HIS173 4.1 12.2 1.0
CD1 G:LEU169 4.8 10.5 1.0
CD1 F:LEU169 4.8 9.3 1.0
CD1 A:LEU169 4.8 9.5 1.0
CD1 C:LEU169 4.9 10.1 1.0
CG A:LEU169 4.9 8.4 1.0
CG F:LEU169 4.9 8.4 1.0
CG C:LEU169 5.0 8.1 1.0
CG G:LEU169 5.0 9.0 1.0

Chlorine binding site 2 out of 2 in 5jkk

Go back to Chlorine Binding Sites List in 5jkk
Chlorine binding site 2 out of 2 in the Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Negatively Supercharged Variant Ftn(Neg) of Human Heavy Chain Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl205

b:2.0
occ:0.25
FE D:FE202 2.6 12.1 0.2
NE2 D:HIS173 3.1 12.9 1.0
NE2 E:HIS173 3.1 12.6 1.0
CD2 D:LEU169 3.9 8.8 1.0
CD2 E:LEU169 3.9 8.8 1.0
CE1 D:HIS173 4.1 13.6 1.0
CD2 D:HIS173 4.1 11.2 1.0
CD2 E:HIS173 4.1 11.7 1.0
CE1 E:HIS173 4.1 12.7 1.0
CD1 E:LEU169 4.8 10.6 1.0
CD1 D:LEU169 4.8 10.4 1.0
CG D:LEU169 4.9 8.9 1.0
CG E:LEU169 5.0 9.3 1.0

Reference:

M.Kuenzle, T.Eckert, T.Beck. Self-Assembly of Charged Protein Containers Enables Positioning of Nanoparticles in A 3-D Lattice to Form Biohybrid Materials To Be Published.
Page generated: Sat Dec 12 11:53:43 2020

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