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Chlorine in PDB 5jkl: Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)

Enzymatic activity of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)

All present enzymatic activity of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition):
1.16.3.1;

Protein crystallography data

The structure of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition), PDB code: 5jkl was solved by M.Kuenzle, T.Beck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.85 / 1.80
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 126.620, 126.620, 174.860, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 17.6

Other elements in 5jkl:

The structure of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms
Iron (Fe) 18 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) (pdb code 5jkl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition), PDB code: 5jkl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5jkl

Go back to Chlorine Binding Sites List in 5jkl
Chlorine binding site 1 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:28.0
occ:0.25
FE A:FE202 2.3 21.8 0.2
CE1 A:HIS173 3.2 21.4 1.0
NE2 A:HIS173 3.4 20.7 1.0
CD2 A:LEU169 4.0 16.9 1.0
ND1 A:HIS173 4.3 23.7 1.0
CD2 A:HIS173 4.6 24.9 1.0
CD1 A:LEU169 4.9 17.4 1.0

Chlorine binding site 2 out of 6 in 5jkl

Go back to Chlorine Binding Sites List in 5jkl
Chlorine binding site 2 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl205

b:28.9
occ:1.00
FE D:FE202 2.3 22.9 1.0
CE1 D:HIS173 3.2 23.4 1.0
NE2 D:HIS173 3.4 24.3 1.0
CD2 D:LEU169 4.0 18.5 1.0
ND1 D:HIS173 4.4 21.5 1.0
CD2 D:HIS173 4.7 28.2 1.0

Chlorine binding site 3 out of 6 in 5jkl

Go back to Chlorine Binding Sites List in 5jkl
Chlorine binding site 3 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl204

b:33.4
occ:0.25
FE F:FE202 2.5 22.5 0.2
CE1 F:HIS173 3.2 22.3 1.0
NE2 F:HIS173 3.6 22.6 1.0
CD2 F:LEU169 3.9 18.2 1.0
ND1 F:HIS173 4.3 22.8 1.0
CD2 F:HIS173 4.8 26.3 1.0
CD1 F:LEU169 5.0 17.2 1.0
CG F:LEU169 5.0 17.5 1.0

Chlorine binding site 4 out of 6 in 5jkl

Go back to Chlorine Binding Sites List in 5jkl
Chlorine binding site 4 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl205

b:32.9
occ:0.25
FE G:FE202 2.2 23.6 0.2
CE1 G:HIS173 3.1 23.9 1.0
NE2 G:HIS173 3.2 23.7 1.0
CD2 G:LEU169 4.1 18.4 1.0
ND1 G:HIS173 4.2 27.7 1.0
CD2 G:HIS173 4.5 29.2 1.0
CG G:HIS173 5.0 21.0 1.0

Chlorine binding site 5 out of 6 in 5jkl

Go back to Chlorine Binding Sites List in 5jkl
Chlorine binding site 5 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl204

b:30.9
occ:1.00
FE H:FE202 2.4 25.7 1.0
CE1 I:HIS173 3.1 21.2 1.0
CE1 H:HIS173 3.2 23.7 1.0
CE1 J:HIS173 3.2 24.6 1.0
CE1 K:HIS173 3.2 26.1 1.0
NE2 I:HIS173 3.4 22.3 1.0
NE2 H:HIS173 3.4 25.4 1.0
NE2 K:HIS173 3.5 26.3 1.0
NE2 J:HIS173 3.5 24.2 1.0
CD2 I:LEU169 3.9 19.0 1.0
CD2 J:LEU169 4.0 18.2 1.0
CD2 H:LEU169 4.0 18.5 1.0
CD2 K:LEU169 4.1 18.4 1.0
ND1 I:HIS173 4.3 23.9 1.0
ND1 H:HIS173 4.3 25.8 1.0
ND1 K:HIS173 4.3 29.6 1.0
ND1 J:HIS173 4.4 24.3 1.0
CD2 I:HIS173 4.6 26.3 1.0
CD2 H:HIS173 4.7 28.2 1.0
CD2 K:HIS173 4.8 30.7 1.0
CD2 J:HIS173 4.8 24.7 1.0
CD1 I:LEU169 4.9 20.1 1.0
CD1 J:LEU169 4.9 21.0 1.0
CD1 K:LEU169 4.9 20.3 1.0
CD1 H:LEU169 4.9 18.4 1.0
CG I:LEU169 5.0 18.5 1.0

Chlorine binding site 6 out of 6 in 5jkl

Go back to Chlorine Binding Sites List in 5jkl
Chlorine binding site 6 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl204

b:32.8
occ:0.25
FE L:FE202 2.1 28.3 0.2
NE2 L:HIS173 3.0 29.0 1.0
CE1 L:HIS173 3.5 28.3 1.0
CD2 L:LEU169 4.1 22.1 1.0
CD2 L:HIS173 4.1 26.6 1.0
ND1 L:HIS173 4.7 35.1 1.0
CG L:HIS173 5.0 23.3 1.0

Reference:

M.Kunzle, T.Eckert, T.Beck. Binary Protein Crystals For the Assembly of Inorganic Nanoparticle Superlattices. J.Am.Chem.Soc. V. 138 12731 2016.
ISSN: ESSN 1520-5126
PubMed: 27617514
DOI: 10.1021/JACS.6B07260
Page generated: Fri Jul 26 10:08:08 2024

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