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Chlorine in PDB 5jny: Crystal Structure of 10E8 Fab

Protein crystallography data

The structure of Crystal Structure of 10E8 Fab, PDB code: 5jny was solved by G.Ofek, P.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.84 / 3.04
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 248.627, 248.627, 54.256, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of 10E8 Fab (pdb code 5jny). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of 10E8 Fab, PDB code: 5jny:

Chlorine binding site 1 out of 1 in 5jny

Go back to Chlorine Binding Sites List in 5jny
Chlorine binding site 1 out of 1 in the Crystal Structure of 10E8 Fab


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of 10E8 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:70.2
occ:1.00
OE2 C:GLU46 3.1 81.5 1.0
NH2 C:ARG38 3.2 50.3 1.0
NE C:ARG38 3.5 42.8 1.0
CZ C:ARG38 3.7 45.1 1.0
CB C:GLU46 4.0 46.0 1.0
O C:TRP47 4.2 40.8 1.0
CD C:GLU46 4.3 62.8 1.0
CB C:ALA60 4.7 42.5 1.0
CD C:ARG38 4.7 42.6 1.0
CG C:GLU46 4.7 44.4 1.0
CG C:PRO62 4.8 46.2 1.0
CG C:ARG38 4.9 41.8 1.0
C C:TRP47 4.9 40.0 1.0
NH1 C:ARG38 4.9 44.6 1.0

Reference:

C.Soto, G.Ofek, M.G.Joyce, B.Zhang, K.Mckee, N.S.Longo, Y.Yang, J.Huang, R.Parks, J.Eudailey, K.E.Lloyd, S.M.Alam, B.F.Haynes, J.C.Mullikin, M.Connors, J.R.Mascola, L.Shapiro, P.D.Kwong. Developmental Pathway of the Mper-Directed Hiv-1-Neutralizing Antibody 10E8. Plos One V. 11 57409 2016.
ISSN: ESSN 1932-6203
PubMed: 27299673
DOI: 10.1371/JOURNAL.PONE.0157409
Page generated: Fri Jul 26 10:09:41 2024

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