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Chlorine in PDB 5jo3: PDE5A For NAV1.7

Enzymatic activity of PDE5A For NAV1.7

All present enzymatic activity of PDE5A For NAV1.7:
3.1.4.35;

Protein crystallography data

The structure of PDE5A For NAV1.7, PDB code: 5jo3 was solved by I.Storer, J.Chrencik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.00 / 1.49
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.840, 76.100, 80.920, 90.00, 102.56, 90.00
R / Rfree (%) 18 / 20.1

Other elements in 5jo3:

The structure of PDE5A For NAV1.7 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the PDE5A For NAV1.7 (pdb code 5jo3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the PDE5A For NAV1.7, PDB code: 5jo3:

Chlorine binding site 1 out of 1 in 5jo3

Go back to Chlorine Binding Sites List in 5jo3
Chlorine binding site 1 out of 1 in the PDE5A For NAV1.7


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of PDE5A For NAV1.7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl903

b:18.7
occ:1.00
CL9 B:6LK903 0.0 18.7 1.0
C8 B:6LK903 1.7 14.0 1.0
C7 B:6LK903 2.7 14.5 1.0
C3 B:6LK903 2.7 13.2 1.0
O2 B:6LK903 2.9 12.6 1.0
O B:LEU765 3.2 9.5 1.0
O B:HOH1080 3.3 12.6 1.0
C B:LEU765 3.6 8.9 1.0
CA B:LEU765 3.7 8.5 1.0
OH B:TYR612 3.7 13.6 1.0
CB B:ALA767 3.9 8.7 1.0
N B:ILE768 3.9 8.9 1.0
N4 B:6LK903 3.9 12.6 1.0
C6 B:6LK903 4.0 11.9 1.0
O B:HOH1100 4.1 17.4 1.0
CD2 B:LEU765 4.2 12.6 1.0
N B:ALA767 4.2 9.1 1.0
CB B:ILE768 4.3 9.5 1.0
CB B:LEU765 4.3 9.0 1.0
C1 B:6LK903 4.3 14.3 1.0
O B:ASP764 4.4 9.4 1.0
C5 B:6LK903 4.4 12.1 1.0
CA B:ALA767 4.4 8.3 1.0
C B:ALA767 4.6 8.9 1.0
N B:SER766 4.6 9.3 1.0
CA B:ILE768 4.6 9.7 1.0
O B:HOH1196 4.7 25.9 1.0
CZ B:TYR612 4.7 11.7 1.0
N B:LEU765 4.9 8.6 1.0
CG B:LEU765 4.9 9.6 1.0
CG2 B:ILE768 5.0 10.8 1.0

Reference:

A.Bell, A.Bent, P.Bradley, P.Erdman, M.De Groot, R.Lewthwaite, I.Marsh, S.Ransley, N.Sciammetta, R.Smith, N.Swain, R.Torella, I.Storer. PDE5A For NAV1.7 To Be Published.
Page generated: Fri Jul 26 10:09:44 2024

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