Atomistry » Chlorine » PDB 5jkc-5jsr » 5jpi
Atomistry »
  Chlorine »
    PDB 5jkc-5jsr »
      5jpi »

Chlorine in PDB 5jpi: 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad

Enzymatic activity of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad

All present enzymatic activity of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad:
3.3.1.1;

Protein crystallography data

The structure of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad, PDB code: 5jpi was solved by G.Minasov, L.Shuvalova, O.Kiryukhina, I.Dubrovska, B.Bishop, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.97 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 115.847, 121.218, 178.770, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 18.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad (pdb code 5jpi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad, PDB code: 5jpi:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5jpi

Go back to Chlorine Binding Sites List in 5jpi
Chlorine binding site 1 out of 4 in the 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl506

b:35.7
occ:1.00
 NH2 B:ARG433 3.3 36.1 1.0
O B:HOH640 3.4 36.6 0.5
NZ B:LYS431 3.5 58.3 1.0
NH1 B:ARG433 3.5 35.1 1.0
CZ B:ARG433 3.9 35.3 1.0
CD B:LYS431 3.9 54.2 1.0
CE B:LYS431 4.0 54.5 1.0
NE1 B:TRP430 4.2 36.0 1.0
CD1 B:TRP430 4.4 34.4 1.0
O B:PRO42 4.7 35.3 1.0

Chlorine binding site 2 out of 4 in 5jpi

Go back to Chlorine Binding Sites List in 5jpi
Chlorine binding site 2 out of 4 in the 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl507

b:80.5
occ:1.00
 OE2 B:GLU367 3.7 46.6 1.0
NZ B:LYS398 4.0 40.1 1.0
OE1 B:GLU367 4.2 48.9 1.0
CD B:GLU367 4.4 44.7 1.0
O B:HOH687 4.4 39.7 1.0
NH2 B:ARG400 4.5 37.2 1.0
CG B:LYS398 4.5 34.4 1.0
CD B:LYS398 4.6 36.6 1.0
NH1 B:ARG400 4.6 42.5 1.0
CB B:LYS398 4.7 33.2 1.0
CZ B:ARG400 4.8 38.0 1.0
O B:HOH847 4.8 43.7 1.0
CE B:LYS398 4.9 38.0 1.0

Chlorine binding site 3 out of 4 in 5jpi

Go back to Chlorine Binding Sites List in 5jpi
Chlorine binding site 3 out of 4 in the 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl506

b:89.2
occ:1.00
 NZ C:LYS398 3.8 39.5 1.0
O C:HOH610 3.9 27.8 0.5
OH C:TYR80 4.1 35.8 1.0
CG C:LYS398 4.2 31.6 1.0
O C:HOH870 4.5 55.1 1.0
CD C:LYS398 4.5 34.4 1.0
CB C:LYS398 4.6 29.6 1.0
OE2 C:GLU367 4.7 45.1 1.0
NH1 C:ARG400 4.7 38.9 1.0
NH2 C:ARG400 4.8 37.0 1.0
CE C:LYS398 4.8 37.6 1.0
OE1 C:GLU367 4.8 45.2 1.0
CZ C:ARG400 4.9 38.1 1.0
O C:HOH867 4.9 32.4 1.0

Chlorine binding site 4 out of 4 in 5jpi

Go back to Chlorine Binding Sites List in 5jpi
Chlorine binding site 4 out of 4 in the 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl507

b:95.3
occ:1.00
 O C:GLU225 4.3 40.5 1.0
C C:GLU225 4.5 40.8 1.0
O C:SER224 4.6 44.4 1.0
N C:GLY226 4.7 41.9 1.0
CA C:GLY226 4.8 40.6 1.0

Reference:

G.Minasov, L.Shuvalova, O.Kiryukhina, I.Dubrovska, B.Bishop, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.15 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with D-Eritadenine and Nad. To Be Published.
Page generated: Fri Jul 26 10:10:45 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy