Atomistry » Chlorine » PDB 5jkc-5jsr » 5jso
Atomistry »
  Chlorine »
    PDB 5jkc-5jsr »
      5jso »

Chlorine in PDB 5jso: Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound

Enzymatic activity of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound

All present enzymatic activity of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound:
4.4.1.3;

Protein crystallography data

The structure of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound, PDB code: 5jso was solved by A.E.Brummett, M.Dey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.82 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.870, 87.761, 48.900, 90.00, 93.37, 90.00
R / Rfree (%) 18.5 / 23.6

Other elements in 5jso:

The structure of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound (pdb code 5jso). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound, PDB code: 5jso:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5jso

Go back to Chlorine Binding Sites List in 5jso
Chlorine binding site 1 out of 5 in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:13.6
occ:1.00
O A:HOH568 2.9 25.2 1.0
N A:GLY53 3.2 13.6 1.0
O A:HOH440 3.4 16.2 1.0
N A:GLY136 3.4 11.4 1.0
CA A:GLY53 3.5 16.4 1.0
CA A:ALA135 3.8 8.9 1.0
CB A:GLN51 3.9 15.0 1.0
C A:GLY53 4.0 17.6 1.0
CD A:PRO52 4.1 17.7 1.0
N A:PRO52 4.1 15.4 1.0
C A:ALA135 4.1 10.8 1.0
CB A:ALA135 4.2 8.3 1.0
O A:GLY53 4.2 21.4 1.0
C A:GLN51 4.3 16.2 1.0
CB A:ALA151 4.3 13.2 1.0
CA A:GLY136 4.4 13.4 1.0
C A:PRO52 4.4 20.7 1.0
CA A:GLN51 4.4 17.2 1.0
CG A:GLN51 4.6 14.0 1.0
O A:HOH439 4.6 21.7 1.0
CG A:PRO52 4.7 18.7 1.0
O A:GLY136 4.8 11.4 1.0
N A:SER54 4.8 15.6 1.0
O A:LEU134 4.8 10.2 1.0
CA A:PRO52 4.9 10.8 1.0
O A:GLN51 5.0 12.9 1.0

Chlorine binding site 2 out of 5 in 5jso

Go back to Chlorine Binding Sites List in 5jso
Chlorine binding site 2 out of 5 in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:26.4
occ:1.00
O A:HOH519 2.4 24.7 1.0
NH1 A:ARG38 3.1 18.2 1.0
O A:HOH428 3.1 29.6 1.0
NE A:ARG75 3.2 16.3 1.0
NH2 A:ARG75 3.4 19.0 1.0
N A:ARG75 3.4 14.6 1.0
NH2 A:ARG38 3.5 19.8 1.0
CZ A:ARG38 3.7 28.2 1.0
CZ A:ARG75 3.8 15.3 1.0
CB A:ARG75 3.9 13.1 1.0
CA A:LYS74 4.0 9.9 1.0
C A:LYS74 4.0 17.4 1.0
CG A:ARG75 4.2 13.4 1.0
CA A:ARG75 4.2 16.2 1.0
CD A:ARG75 4.2 14.4 1.0
CG2 A:ILE40 4.4 12.9 1.0
CB A:LYS74 4.6 11.0 1.0
N A:THR76 4.7 18.0 1.0
NH1 A:ARG87 4.7 16.9 1.0
C A:ARG75 5.0 16.1 1.0

Chlorine binding site 3 out of 5 in 5jso

Go back to Chlorine Binding Sites List in 5jso
Chlorine binding site 3 out of 5 in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:16.3
occ:1.00
O B:HOH561 3.1 19.8 1.0
O B:HOH451 3.2 15.6 1.0
N B:GLY136 3.3 10.7 1.0
N B:GLY53 3.3 16.3 1.0
CA B:GLY53 3.5 13.4 1.0
CA B:ALA135 3.8 9.7 1.0
CB B:GLN51 3.8 13.8 1.0
C B:ALA135 4.0 11.8 1.0
C B:GLY53 4.1 18.6 1.0
CD B:PRO52 4.1 20.5 1.0
CB B:ALA135 4.2 7.8 1.0
N B:PRO52 4.2 17.9 1.0
CA B:GLY136 4.3 9.2 1.0
O B:GLY53 4.3 18.5 1.0
CB B:ALA151 4.3 15.5 1.0
C B:GLN51 4.4 18.6 1.0
CG B:GLN51 4.4 16.8 1.0
CA B:GLN51 4.5 14.6 1.0
C B:PRO52 4.5 18.1 1.0
O B:HOH415 4.6 23.0 1.0
O B:GLY136 4.7 12.8 1.0
O B:LEU134 4.8 10.9 1.0
CG B:PRO52 4.8 15.6 1.0
N B:SER54 4.8 12.9 1.0
N B:ALA135 5.0 10.9 1.0
CA B:PRO52 5.0 12.6 1.0

Chlorine binding site 4 out of 5 in 5jso

Go back to Chlorine Binding Sites List in 5jso
Chlorine binding site 4 out of 5 in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:26.2
occ:1.00
O B:HOH538 2.4 19.7 1.0
O B:HOH485 2.9 32.1 1.0
NH1 B:ARG38 3.0 17.6 1.0
NE B:ARG75 3.2 15.8 1.0
NH2 B:ARG38 3.4 20.7 1.0
NH2 B:ARG75 3.4 20.9 1.0
N B:ARG75 3.5 16.5 1.0
CZ B:ARG38 3.6 31.6 1.0
CZ B:ARG75 3.8 20.9 1.0
CB B:ARG75 3.9 10.7 1.0
CA B:LYS74 4.0 15.0 1.0
C B:LYS74 4.1 19.1 1.0
CG B:ARG75 4.2 12.4 1.0
CA B:ARG75 4.3 16.7 1.0
CD B:ARG75 4.3 15.2 1.0
CG2 B:ILE40 4.5 12.8 1.0
N B:THR76 4.7 18.9 1.0
NH1 B:ARG87 4.8 17.2 1.0
CB B:LYS74 4.8 11.0 1.0
O B:TRP73 4.9 8.1 1.0
NE B:ARG38 4.9 15.6 1.0
C B:ARG75 5.0 14.8 1.0

Chlorine binding site 5 out of 5 in 5jso

Go back to Chlorine Binding Sites List in 5jso
Chlorine binding site 5 out of 5 in the Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structures of Dddq From Ruegeria Lac. Reveal Key Residues For Metal Binding and Catalysis - Tris Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:32.8
occ:1.00
O B:HOH489 2.6 24.1 1.0
O1 B:GOL306 3.1 31.7 1.0
NE1 B:TRP26 3.2 13.1 1.0
CD1 B:LEU30 3.8 13.3 1.0
CD B:ARG11 3.9 15.7 1.0
CD1 B:TRP26 4.1 12.8 1.0
CD2 B:LEU7 4.1 12.2 1.0
CE2 B:TRP26 4.2 15.7 1.0
CG B:LEU7 4.4 7.8 1.0
C1 B:GOL306 4.4 31.2 1.0
CZ2 B:TRP26 4.6 10.7 1.0
CG B:ARG11 4.6 13.7 1.0
O B:HOH478 4.8 12.4 1.0
CB B:ARG11 4.8 8.3 1.0
NE B:ARG11 4.8 20.2 1.0
OE1 B:GLU8 4.8 17.5 1.0
O B:HOH492 4.9 24.6 1.0
O2 B:GOL306 5.0 34.7 1.0

Reference:

A.E.Brummett, M.Dey. New Mechanistic Insight From Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase Dddq. Biochemistry V. 55 6162 2016.
ISSN: ISSN 1520-4995
PubMed: 27755868
DOI: 10.1021/ACS.BIOCHEM.6B00585
Page generated: Fri Jul 26 10:12:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy