Chlorine in PDB 5jt8: Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1

The structure of Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1, PDB code: 5jt8 was solved by K.Meno, J.S.Kastrup, M.Gajhede, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.47 / 2.10
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	117.412, 117.412, 132.364, 90.00, 90.00, 120.00
R / Rfree (%)	17 / 21.7

The binding sites of Chlorine atom in the Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1 (pdb code 5jt8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1, PDB code: 5jt8:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:65.3 occ:1.00 O A:HOH611 2.7 45.6 1.0 NE A:ARG178 3.2 58.5 1.0 NH2 A:ARG178 3.2 56.5 1.0 CZ A:ARG178 3.6 60.8 1.0 CG A:LYS174 4.0 43.2 1.0 CD A:ARG178 4.3 54.1 1.0 CG A:ARG178 4.3 48.7 1.0 CD1 A:ILE177 4.4 33.6 1.0 CG2 A:ILE177 4.6 28.9 1.0 CB A:LYS174 4.7 36.1 1.0 CE A:LYS174 4.8 44.1 1.0 CA A:LYS174 4.8 24.1 1.0 CD A:LYS174 4.8 45.4 1.0 CB A:ILE177 4.8 33.0 1.0 O A:LYS174 4.8 29.8 1.0 NH1 A:ARG178 4.9 66.9 1.0

Chlorine binding site 2 out of 4 in the Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:65.2 occ:1.00 N A:THR193 3.2 41.4 1.0 CA A:ARG192 3.8 41.1 1.0 OG1 A:THR193 3.9 44.5 1.0 CB A:ARG192 3.9 52.8 1.0 CB A:THR193 3.9 45.7 1.0 C A:ARG192 4.0 42.7 1.0 CA A:THR193 4.1 43.3 1.0 CB A:CYS164 4.4 37.1 1.0 O A:THR193 4.5 45.4 1.0 SG A:CYS164 4.5 36.9 1.0 C A:THR193 4.8 43.5 1.0

Chlorine binding site 3 out of 4 in the Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl403 b:72.4 occ:1.00 N B:THR193 3.5 41.3 1.0 O B:HOH630 3.9 44.8 1.0 OG1 B:THR193 4.0 46.5 1.0 CB B:CYS164 4.0 35.8 1.0 CA B:ARG192 4.1 44.6 1.0 CB B:THR193 4.2 48.4 1.0 SG B:CYS164 4.3 35.5 1.0 C B:ARG192 4.3 45.5 1.0 CB B:ARG192 4.3 46.5 1.0 CA B:THR193 4.4 46.3 1.0 O B:HOH584 4.8 52.6 1.0

Chlorine binding site 4 out of 4 in the Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structural Basis For the Limited Antibody Cross Reactivity Between the Mite Allergens Blo T 1 and Der P 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl404 b:65.6 occ:1.00 NH1 B:ARG178 3.2 48.5 1.0 CD B:ARG178 3.7 45.0 1.0 CD1 B:ILE177 4.2 30.7 1.0 CG B:LYS174 4.2 49.9 1.0 CG2 B:ILE177 4.2 29.4 1.0 CZ B:ARG178 4.3 53.1 1.0 NE B:ARG178 4.4 55.6 1.0 CG B:ARG178 4.6 45.5 1.0 CB B:ILE177 4.6 29.2 1.0 CD B:LYS174 4.9 53.1 1.0 O B:LYS174 4.9 31.3 1.0

K.H.Meno, J.S.Kastrup, I.C.Kuo, K.Y.Chua, M.Gajhede. The Structure of the Mite Allergen Blo T 1 Explains the Limited Antibody Cross-Reactivity to Der P 1. Allergy V. 72 665 2017.
ISSN: ESSN 1398-9995
PubMed: 27997997
DOI: 10.1111/ALL.13111