Atomistry » Chlorine » PDB 5jsr-5jzk » 5jx0
Atomistry »
  Chlorine »
    PDB 5jsr-5jzk »
      5jx0 »

Chlorine in PDB 5jx0: Temperature Sensitive D4 Mutant L110F

Enzymatic activity of Temperature Sensitive D4 Mutant L110F

All present enzymatic activity of Temperature Sensitive D4 Mutant L110F:
3.2.2.27;

Protein crystallography data

The structure of Temperature Sensitive D4 Mutant L110F, PDB code: 5jx0 was solved by N.Schormann, D.Chattopadhyay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.08 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 92.346, 102.916, 116.587, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 25.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Temperature Sensitive D4 Mutant L110F (pdb code 5jx0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Temperature Sensitive D4 Mutant L110F, PDB code: 5jx0:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5jx0

Go back to Chlorine Binding Sites List in 5jx0
Chlorine binding site 1 out of 4 in the Temperature Sensitive D4 Mutant L110F


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Temperature Sensitive D4 Mutant L110F within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:52.9
occ:1.00
N A:LYS160 3.2 44.0 1.0
N A:HIS181 3.3 45.2 1.0
CG A:LYS160 3.7 45.7 1.0
CA A:TYR180 3.8 41.5 1.0
CB A:LYS160 3.9 44.3 1.0
CA A:GLY159 3.9 37.0 1.0
O A:HOH429 3.9 45.3 1.0
CB A:HIS181 3.9 55.7 1.0
CD1 A:TYR180 4.0 42.6 1.0
C A:GLY159 4.0 39.4 1.0
C A:TYR180 4.1 41.3 1.0
CA A:LYS160 4.1 44.2 1.0
CB A:ALA184 4.2 58.4 1.0
CA A:HIS181 4.2 50.5 1.0
CB A:TYR180 4.3 42.0 1.0
CG A:TYR180 4.6 43.9 1.0
O A:GLY179 4.6 44.9 1.0
N A:GLY159 4.7 37.0 1.0
N A:THR161 4.7 47.3 1.0
CE1 A:TYR180 4.9 44.8 1.0
O A:HIS181 4.9 50.1 1.0
N A:TYR180 4.9 42.3 1.0

Chlorine binding site 2 out of 4 in 5jx0

Go back to Chlorine Binding Sites List in 5jx0
Chlorine binding site 2 out of 4 in the Temperature Sensitive D4 Mutant L110F


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Temperature Sensitive D4 Mutant L110F within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:43.6
occ:1.00
N B:HIS181 3.2 40.7 1.0
N B:LYS160 3.3 45.1 1.0
CB B:HIS181 3.7 54.5 1.0
CA B:TYR180 3.7 42.3 1.0
CG B:LYS160 3.8 45.6 1.0
CA B:GLY159 3.9 37.9 1.0
O B:HOH446 3.9 42.9 1.0
C B:TYR180 4.0 40.2 1.0
CD1 B:TYR180 4.0 41.3 1.0
CB B:LYS160 4.0 46.6 1.0
CA B:HIS181 4.1 48.0 1.0
CB B:ALA184 4.1 75.3 1.0
C B:GLY159 4.1 42.2 1.0
CA B:LYS160 4.3 46.7 1.0
CB B:TYR180 4.3 41.8 1.0
CG B:TYR180 4.6 43.8 1.0
O B:GLY179 4.7 37.1 1.0
N B:GLY159 4.7 35.0 1.0
O B:HIS181 4.8 49.2 1.0
N B:THR161 4.9 46.4 1.0
N B:TYR180 4.9 41.4 1.0
CE1 B:TYR180 4.9 41.3 1.0
C B:HIS181 5.0 47.3 1.0

Chlorine binding site 3 out of 4 in 5jx0

Go back to Chlorine Binding Sites List in 5jx0
Chlorine binding site 3 out of 4 in the Temperature Sensitive D4 Mutant L110F


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Temperature Sensitive D4 Mutant L110F within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:51.4
occ:1.00
N C:LYS160 3.2 44.4 1.0
N C:HIS181 3.2 45.3 1.0
O C:HOH436 3.6 58.5 1.0
CG C:LYS160 3.7 50.0 1.0
CA C:TYR180 3.8 39.6 1.0
CB C:LYS160 3.8 47.6 1.0
CA C:GLY159 3.8 40.3 1.0
CB C:HIS181 3.9 57.3 1.0
CD1 C:TYR180 4.0 38.0 1.0
C C:GLY159 4.0 42.8 1.0
C C:TYR180 4.0 41.2 1.0
CA C:LYS160 4.1 45.5 1.0
CA C:HIS181 4.2 48.7 1.0
CB C:ALA184 4.2 68.2 1.0
CB C:TYR180 4.3 36.6 1.0
CG C:TYR180 4.6 38.1 1.0
O C:GLY179 4.6 40.4 1.0
N C:GLY159 4.7 39.1 1.0
N C:THR161 4.7 49.4 1.0
O C:HIS181 4.9 51.4 1.0
N C:TYR180 4.9 39.8 1.0
CE1 C:TYR180 4.9 39.8 1.0
C C:LYS160 5.0 43.9 1.0

Chlorine binding site 4 out of 4 in 5jx0

Go back to Chlorine Binding Sites List in 5jx0
Chlorine binding site 4 out of 4 in the Temperature Sensitive D4 Mutant L110F


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Temperature Sensitive D4 Mutant L110F within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:57.5
occ:1.00
N D:HIS181 3.2 46.7 1.0
N D:LYS160 3.3 44.8 1.0
CB D:HIS181 3.8 59.1 1.0
CA D:GLY159 3.8 43.1 1.0
CA D:TYR180 3.8 44.4 1.0
CG D:LYS160 3.9 48.6 1.0
CB D:LYS160 4.0 48.1 1.0
C D:TYR180 4.0 43.8 1.0
C D:GLY159 4.0 44.4 1.0
CB D:ALA184 4.1 80.0 1.0
CD1 D:TYR180 4.1 46.1 1.0
CA D:HIS181 4.1 52.5 1.0
CA D:LYS160 4.2 46.1 1.0
CB D:TYR180 4.4 43.7 1.0
N D:GLY159 4.7 42.4 1.0
CG D:TYR180 4.7 44.1 1.0
O D:GLY179 4.7 35.0 1.0
O D:HIS181 4.8 46.8 1.0
N D:THR161 4.8 54.0 1.0
CA D:ALA184 4.9 83.5 1.0

Reference:

N.Schormann, N.Zhukovskaya, G.Bedwell, M.Nuth, R.Gillilan, P.E.Prevelige, R.P.Ricciardi, S.Banerjee, D.Chattopadhyay. Poxvirus Uracil-Dna Glycosylase-An Unusual Member of the Family I Uracil-Dna Glycosylases. Protein Sci. V. 25 2113 2016.
ISSN: ESSN 1469-896X
PubMed: 27684934
DOI: 10.1002/PRO.3058
Page generated: Sat Dec 12 11:54:49 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy