Atomistry » Chlorine » PDB 5jzn-5k9c » 5jzs
Atomistry »
  Chlorine »
    PDB 5jzn-5k9c »
      5jzs »

Chlorine in PDB 5jzs: Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid

Enzymatic activity of Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid

All present enzymatic activity of Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid:
3.7.1.8;

Protein crystallography data

The structure of Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid, PDB code: 5jzs was solved by A.Ryan, E.Polycarpou, N.Lack, D.Evangelopoulos, C.Sieg, A.Halman, S.Bhakta, A.Sinclair, O.Eleftheriadou, T.D.Mchugh, S.Keany, E.D.Lowe, R.Ballet, A.Abuhammad, A.Ciulli, E.Sim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 97.57 / 2.27
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.920, 82.270, 195.130, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 23.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid (pdb code 5jzs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid, PDB code: 5jzs:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5jzs

Go back to Chlorine Binding Sites List in 5jzs
Chlorine binding site 1 out of 2 in the Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1000

b:80.4
occ:0.90
CL1 B:FGZ1000 0.0 80.4 0.9
C06 B:FGZ1000 1.8 62.9 0.9
C05 B:FGZ1000 2.7 49.1 0.9
C08 B:FGZ1000 2.7 57.6 0.9
O09 B:FGZ1000 3.0 57.1 0.9
O B:HOH1153 3.7 42.6 1.0
C04 B:FGZ1000 4.0 51.3 0.9
C10 B:FGZ1000 4.0 54.9 0.9
CD1 B:LEU115 4.2 39.7 1.0
O B:HOH1152 4.5 55.9 1.0
C12 B:FGZ1000 4.5 50.0 0.9
CZ B:PHE212 4.7 66.0 1.0
CB B:LEU115 4.8 35.1 1.0
CG B:LEU115 4.9 41.5 1.0
CD2 B:LEU115 4.9 40.5 1.0
CD2 B:LEU158 5.0 50.8 1.0

Chlorine binding site 2 out of 2 in 5jzs

Go back to Chlorine Binding Sites List in 5jzs
Chlorine binding site 2 out of 2 in the Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hsad Bound to 3,5-Dichloro-4-Hydroxybenzoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1000

b:60.8
occ:0.90
CL2 B:FGZ1000 0.0 60.8 0.9
C10 B:FGZ1000 1.8 54.9 0.9
C12 B:FGZ1000 2.7 50.0 0.9
C08 B:FGZ1000 2.8 57.6 0.9
O09 B:FGZ1000 3.1 57.1 0.9
CD2 B:LEU158 3.2 50.8 1.0
O B:GLY154 3.5 31.1 1.0
CA B:VAL155 3.5 32.6 1.0
CG1 B:VAL243 3.6 35.2 1.0
C B:GLY154 3.7 34.0 1.0
N B:VAL155 3.7 36.0 1.0
CB B:LEU158 3.7 37.6 1.0
CE1 B:PHE173 3.8 48.5 1.0
CG2 B:VAL155 3.8 35.8 1.0
C04 B:FGZ1000 4.0 51.3 0.9
C06 B:FGZ1000 4.1 62.9 0.9
CG B:LEU158 4.1 47.2 1.0
CB B:VAL155 4.3 30.2 1.0
CZ B:PHE173 4.4 48.8 1.0
C05 B:FGZ1000 4.5 49.1 0.9
C B:VAL155 4.6 28.5 1.0
CG2 B:VAL243 4.6 27.4 1.0
CB B:VAL243 4.7 31.6 1.0
O B:VAL155 4.7 32.9 1.0
CA B:GLY154 4.7 35.6 1.0
CD1 B:PHE173 4.8 42.7 1.0
CG1 B:VAL155 4.9 25.1 1.0

Reference:

A.Ryan, E.Polycarpou, N.A.Lack, D.Evangelopoulos, C.Sieg, A.Halman, S.Bhakta, O.Eleftheriadou, T.D.Mchugh, S.Keany, E.D.Lowe, R.Ballet, A.Abuhammad, W.R.Jacobs, A.Ciulli, E.Sim. Investigation of the Mycobacterial Enzyme Hsad As A Potential Novel Target For Anti-Tubercular Agents Using A Fragment-Based Drug Design Approach. Br. J. Pharmacol. V. 174 2209 2017.
ISSN: ISSN 1476-5381
PubMed: 28380256
DOI: 10.1111/BPH.13810
Page generated: Fri Jul 26 10:22:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy