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Chlorine in PDB 5k7o: Microed Structure of Lysozyme at 1.8 A Resolution

Enzymatic activity of Microed Structure of Lysozyme at 1.8 A Resolution

All present enzymatic activity of Microed Structure of Lysozyme at 1.8 A Resolution:
3.2.1.17;

Other elements in 5k7o:

The structure of Microed Structure of Lysozyme at 1.8 A Resolution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Microed Structure of Lysozyme at 1.8 A Resolution (pdb code 5k7o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Microed Structure of Lysozyme at 1.8 A Resolution, PDB code: 5k7o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5k7o

Go back to Chlorine Binding Sites List in 5k7o
Chlorine binding site 1 out of 2 in the Microed Structure of Lysozyme at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Microed Structure of Lysozyme at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:15.0
occ:1.00
O A:HOH360 2.8 12.2 1.0
OH A:TYR23 2.9 8.6 1.0
CZ A:TYR23 3.5 7.8 1.0
CE2 A:TYR23 3.5 9.0 1.0
O A:HOH341 3.7 11.1 1.0
CA A:GLY104 3.8 10.0 1.0
N A:GLY104 4.4 9.7 1.0
O A:ARG21 4.4 10.3 1.0
O A:HOH313 4.5 13.4 1.0
CE1 A:TYR23 4.7 7.2 1.0
CD2 A:TYR23 4.7 7.3 1.0
C A:GLY104 5.0 7.6 1.0

Chlorine binding site 2 out of 2 in 5k7o

Go back to Chlorine Binding Sites List in 5k7o
Chlorine binding site 2 out of 2 in the Microed Structure of Lysozyme at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Microed Structure of Lysozyme at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:23.0
occ:1.00
N A:ILE88 3.3 11.1 1.0
OD1 A:ASP87 3.4 17.9 1.0
NH2 A:ARG14 3.6 21.1 1.0
CA A:ASP87 3.6 11.5 1.0
CE1 A:HIS15 3.7 20.6 1.0
CG1 A:ILE88 3.9 13.5 1.0
O A:SER86 4.0 13.4 1.0
C A:ASP87 4.0 12.9 1.0
CG A:ASP87 4.0 20.9 1.0
CB A:ALA11 4.1 11.4 1.0
CZ A:PHE3 4.2 13.7 1.0
CA A:ILE88 4.4 11.1 1.0
CB A:ASP87 4.4 16.1 1.0
CG2 A:ILE88 4.4 12.2 1.0
CB A:ILE88 4.4 10.2 1.0
ND1 A:HIS15 4.5 12.6 1.0
CE2 A:PHE3 4.6 11.2 1.0
N A:ASP87 4.7 12.3 1.0
NE2 A:HIS15 4.7 19.1 1.0
C A:SER86 4.7 13.6 1.0
CZ A:ARG14 4.8 16.6 1.0
CD1 A:ILE88 4.8 10.3 1.0
OD2 A:ASP87 4.8 23.5 1.0
N A:THR89 4.8 11.2 1.0
C A:ILE88 5.0 9.8 1.0

Reference:

M.J.De La Cruz, J.Hattne, D.Shi, P.Seidler, J.Rodriguez, F.E.Reyes, M.R.Sawaya, D.Cascio, S.C.Weiss, S.K.Kim, C.S.Hinck, A.P.Hinck, G.Calero, D.Eisenberg, T.Gonen. Atomic-Resolution Structures From Fragmented Protein Crystals with the Cryoem Method Microed. Nat. Methods V. 14 399 2017.
ISSN: ESSN 1548-7105
PubMed: 28192420
DOI: 10.1038/NMETH.4178
Page generated: Sat Jul 12 03:54:57 2025

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