Chlorine in PDB 5k8r: Structure of Human Clustered Protocadherin Gamma B3 EC1-4

The structure of Structure of Human Clustered Protocadherin Gamma B3 EC1-4, PDB code: 5k8r was solved by J.M.Nicoludis, B.E.Vogt, R.Gaudet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.35 / 2.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	128.881, 161.229, 53.659, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 25.9

The structure of Structure of Human Clustered Protocadherin Gamma B3 EC1-4 also contains other interesting chemical elements:

Calcium	(Ca)	9 atoms
Sodium	(Na)	1 atom

The binding sites of Chlorine atom in the Structure of Human Clustered Protocadherin Gamma B3 EC1-4 (pdb code 5k8r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Human Clustered Protocadherin Gamma B3 EC1-4, PDB code: 5k8r:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Human Clustered Protocadherin Gamma B3 EC1-4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Clustered Protocadherin Gamma B3 EC1-4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl510 b:62.0 occ:1.00 ND2 A:ASN85 3.0 70.8 1.0 NH1 A:ARG34 3.2 73.0 1.0 NH2 A:ARG34 3.6 68.0 1.0 CZ A:ARG34 3.9 66.6 1.0 CZ A:PHE87 4.1 49.5 1.0 CG A:ASN85 4.1 65.2 1.0 CG A:PRO83 4.4 38.5 1.0 CB A:ASN85 4.4 51.5 1.0 CD A:PRO83 4.6 40.2 1.0 CE1 A:PHE87 4.9 44.5 1.0 CE2 A:PHE87 5.0 48.4 1.0

Chlorine binding site 2 out of 2 in the Structure of Human Clustered Protocadherin Gamma B3 EC1-4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Human Clustered Protocadherin Gamma B3 EC1-4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl511 b:80.3 occ:1.00 CG2 A:VAL258 3.6 69.8 1.0 NH1 A:ARG282 3.9 54.2 1.0 NH2 A:ARG282 4.0 54.8 1.0 N A:GLY255 4.2 52.6 1.0 CZ A:ARG282 4.4 58.3 1.0 CD1 A:ILE254 4.7 58.1 1.0 CB A:VAL258 4.7 53.6 1.0 CA A:GLY255 4.7 51.0 1.0 O A:ASN253 4.7 63.8 1.0

J.M.Nicoludis, B.E.Vogt, A.G.Green, C.P.Scharfe, D.S.Marks, R.Gaudet. Antiparallel Protocadherin Homodimers Use Distinct Affinity- and Specificity-Mediating Regions in Cadherin Repeats 1-4. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27472898
DOI: 10.7554/ELIFE.18449