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Chlorine in PDB 5kb3: 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma

Enzymatic activity of 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma

All present enzymatic activity of 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma:
3.2.2.30; 3.2.2.9;

Protein crystallography data

The structure of 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma, PDB code: 5kb3 was solved by M.T.Banco, D.R.Ronning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.76 / 1.40
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.207, 81.207, 67.254, 90.00, 90.00, 120.00
R / Rfree (%) 13.9 / 17

Other elements in 5kb3:

The structure of 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma (pdb code 5kb3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma, PDB code: 5kb3:

Chlorine binding site 1 out of 1 in 5kb3

Go back to Chlorine Binding Sites List in 5kb3
Chlorine binding site 1 out of 1 in the 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.4 A Resolution Structure of Helicobacter Pylori Mtan in Complexed with P-Clph-Dadme-Imma within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:0.3
occ:1.00
CL1 A:4CT301 0.0 0.3 1.0
C11 A:4CT301 1.8 60.3 1.0
C9' A:4CT301 2.7 22.2 1.0
C13 A:4CT301 2.8 43.9 1.0
O A:HOH614 3.6 37.5 1.0
O A:HOH578 3.7 42.1 1.0
C8' A:4CT301 4.0 19.9 1.0
C14 A:4CT301 4.0 24.2 1.0
C7' A:4CT301 4.6 20.6 1.0

Reference:

M.T.Banco, V.Mishra, A.Ostermann, T.E.Schrader, G.B.Evans, A.Kovalevsky, D.R.Ronning. Neutron Structures of the Helicobacter Pylori 5'-Methylthioadenosine Nucleosidase Highlight Proton Sharing and Protonation States. Proc. Natl. Acad. Sci. V. 113 13756 2016U.S.A..
ISSN: ESSN 1091-6490
PubMed: 27856757
DOI: 10.1073/PNAS.1609718113
Page generated: Fri Jul 26 10:35:45 2024

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