Chlorine in PDB 5kb6: High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine
Enzymatic activity of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine
All present enzymatic activity of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine:
2.7.1.20;
Protein crystallography data
The structure of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine, PDB code: 5kb6
was solved by
R.R.Oliveira,
R.M.Neto,
C.C.Polo,
C.C.C.Tonoli,
M.T.Murakami,
K.G.Franchini,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.76 /
1.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.839,
82.159,
89.189,
90.00,
92.69,
90.00
|
R / Rfree (%)
|
14.1 /
15.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine
(pdb code 5kb6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine, PDB code: 5kb6:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 5kb6
Go back to
Chlorine Binding Sites List in 5kb6
Chlorine binding site 1 out
of 2 in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl403
b:12.5
occ:1.00
|
H
|
A:ASN30
|
2.3
|
12.2
|
1.0
|
H
|
A:THR82
|
2.3
|
10.0
|
1.0
|
HB3
|
A:SER81
|
2.9
|
11.4
|
1.0
|
HA3
|
A:GLY29
|
3.1
|
12.0
|
1.0
|
HB3
|
A:ALA184
|
3.1
|
13.4
|
1.0
|
OG1
|
A:THR82
|
3.2
|
11.5
|
1.0
|
HB2
|
A:ASN30
|
3.2
|
13.8
|
1.0
|
O
|
A:HOH631
|
3.2
|
12.8
|
1.0
|
N
|
A:ASN30
|
3.3
|
11.6
|
1.0
|
N
|
A:THR82
|
3.3
|
10.4
|
1.0
|
HG1
|
A:THR82
|
3.3
|
11.6
|
0.0
|
HB
|
A:THR82
|
3.3
|
11.4
|
1.0
|
H
|
A:SER81
|
3.5
|
11.4
|
1.0
|
HB2
|
A:PHE186
|
3.5
|
13.1
|
1.0
|
HD2
|
A:PHE186
|
3.6
|
14.2
|
1.0
|
CB
|
A:THR82
|
3.7
|
11.1
|
1.0
|
CA
|
A:GLY29
|
3.8
|
11.8
|
1.0
|
CB
|
A:SER81
|
3.8
|
11.5
|
1.0
|
CB
|
A:ALA184
|
3.9
|
13.3
|
1.0
|
HB1
|
A:ALA184
|
3.9
|
13.2
|
1.0
|
N
|
A:SER81
|
3.9
|
11.9
|
1.0
|
CB
|
A:ASN30
|
4.0
|
13.3
|
1.0
|
HA2
|
A:GLY29
|
4.0
|
11.4
|
1.0
|
C
|
A:GLY29
|
4.1
|
11.2
|
1.0
|
CA
|
A:THR82
|
4.1
|
10.4
|
1.0
|
CA
|
A:ASN30
|
4.1
|
12.1
|
1.0
|
HB2
|
A:ALA184
|
4.2
|
13.0
|
1.0
|
CA
|
A:SER81
|
4.2
|
11.5
|
1.0
|
O
|
A:ASN30
|
4.2
|
14.2
|
1.0
|
C
|
A:SER81
|
4.2
|
11.0
|
1.0
|
HB2
|
A:SER81
|
4.3
|
11.8
|
1.0
|
CB
|
A:PHE186
|
4.3
|
13.6
|
1.0
|
HD22
|
A:ASN30
|
4.4
|
17.2
|
1.0
|
CG
|
A:ASN30
|
4.4
|
15.4
|
1.0
|
CD2
|
A:PHE186
|
4.4
|
14.3
|
1.0
|
H
|
A:GLN83
|
4.4
|
10.5
|
1.0
|
ND2
|
A:ASN30
|
4.5
|
18.1
|
1.0
|
HB3
|
A:PHE186
|
4.5
|
13.8
|
1.0
|
H
|
A:ALA184
|
4.5
|
10.7
|
1.0
|
HB2
|
A:PHE187
|
4.5
|
12.2
|
1.0
|
C
|
A:ASN30
|
4.6
|
12.6
|
1.0
|
HA
|
A:THR82
|
4.7
|
10.9
|
1.0
|
OG
|
A:SER81
|
4.7
|
12.5
|
1.0
|
HB3
|
A:ASN30
|
4.7
|
13.5
|
1.0
|
C
|
A:GLY80
|
4.8
|
11.6
|
1.0
|
H
|
A:PHE187
|
4.8
|
12.7
|
1.0
|
HG
|
A:SER81
|
4.8
|
12.5
|
0.0
|
CG
|
A:PHE186
|
4.9
|
13.5
|
1.0
|
HD21
|
A:ASN30
|
5.0
|
17.3
|
1.0
|
HA3
|
A:GLY80
|
5.0
|
12.4
|
1.0
|
HA
|
A:ASN30
|
5.0
|
12.6
|
1.0
|
HE1
|
A:PHE102
|
5.0
|
10.9
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 5kb6
Go back to
Chlorine Binding Sites List in 5kb6
Chlorine binding site 2 out
of 2 in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl403
b:13.1
occ:1.00
|
H
|
B:ASN30
|
2.3
|
12.5
|
1.0
|
H
|
B:THR82
|
2.3
|
10.7
|
1.0
|
HB3
|
B:SER81
|
2.9
|
12.1
|
1.0
|
HB3
|
B:ALA184
|
3.1
|
14.0
|
1.0
|
HA3
|
B:GLY29
|
3.1
|
12.2
|
1.0
|
OG1
|
B:THR82
|
3.2
|
12.3
|
1.0
|
HB2
|
B:ASN30
|
3.2
|
14.3
|
1.0
|
O
|
B:HOH634
|
3.2
|
13.8
|
1.0
|
N
|
B:ASN30
|
3.3
|
12.0
|
1.0
|
N
|
B:THR82
|
3.3
|
10.9
|
1.0
|
HG1
|
B:THR82
|
3.3
|
12.3
|
0.0
|
HB
|
B:THR82
|
3.4
|
11.9
|
1.0
|
H
|
B:SER81
|
3.4
|
12.8
|
1.0
|
HB2
|
B:PHE186
|
3.4
|
13.8
|
1.0
|
HD2
|
B:PHE186
|
3.6
|
15.1
|
1.0
|
CB
|
B:THR82
|
3.7
|
11.7
|
1.0
|
CA
|
B:GLY29
|
3.8
|
11.9
|
1.0
|
CB
|
B:ALA184
|
3.8
|
13.5
|
1.0
|
CB
|
B:SER81
|
3.9
|
12.2
|
1.0
|
N
|
B:SER81
|
3.9
|
12.5
|
1.0
|
HB1
|
B:ALA184
|
3.9
|
13.7
|
1.0
|
HA2
|
B:GLY29
|
4.0
|
11.7
|
1.0
|
CB
|
B:ASN30
|
4.0
|
14.1
|
1.0
|
C
|
B:GLY29
|
4.1
|
11.7
|
1.0
|
CA
|
B:THR82
|
4.1
|
10.6
|
1.0
|
CA
|
B:ASN30
|
4.1
|
12.5
|
1.0
|
O
|
B:HOH627
|
4.1
|
46.4
|
1.0
|
HB2
|
B:ALA184
|
4.1
|
13.2
|
1.0
|
CA
|
B:SER81
|
4.2
|
11.8
|
1.0
|
O
|
B:ASN30
|
4.2
|
14.2
|
1.0
|
C
|
B:SER81
|
4.2
|
11.1
|
1.0
|
O
|
B:HOH690
|
4.3
|
39.3
|
1.0
|
CB
|
B:PHE186
|
4.3
|
14.5
|
1.0
|
HB2
|
B:SER81
|
4.3
|
12.4
|
1.0
|
CD2
|
B:PHE186
|
4.3
|
15.3
|
1.0
|
H
|
B:GLN83
|
4.4
|
10.9
|
1.0
|
HD22
|
B:ASN30
|
4.4
|
18.2
|
1.0
|
CG
|
B:ASN30
|
4.4
|
16.7
|
1.0
|
HB3
|
B:PHE186
|
4.4
|
14.9
|
1.0
|
H
|
B:ALA184
|
4.5
|
10.5
|
1.0
|
C
|
B:ASN30
|
4.5
|
12.6
|
1.0
|
HB2
|
B:PHE187
|
4.6
|
13.2
|
1.0
|
ND2
|
B:ASN30
|
4.6
|
19.2
|
1.0
|
HA
|
B:THR82
|
4.7
|
11.1
|
1.0
|
OG
|
B:SER81
|
4.7
|
12.9
|
1.0
|
HB3
|
B:ASN30
|
4.8
|
13.6
|
1.0
|
C
|
B:GLY80
|
4.8
|
12.2
|
1.0
|
CG
|
B:PHE186
|
4.8
|
14.4
|
1.0
|
H
|
B:PHE187
|
4.8
|
13.5
|
1.0
|
HG
|
B:SER81
|
4.9
|
12.9
|
0.0
|
HA3
|
B:GLY80
|
4.9
|
13.1
|
1.0
|
HE1
|
B:PHE102
|
5.0
|
12.2
|
1.0
|
HA
|
B:ASN30
|
5.0
|
13.2
|
1.0
|
|
Reference:
R.R.Oliveira,
R.M.Neto,
C.C.Polo,
C.C.C.Tonoli,
M.T.Murakami,
K.G.Franchini.
High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine To Be Published.
Page generated: Fri Jul 26 10:35:54 2024
|