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Chlorine in PDB 5kb6: High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine

Enzymatic activity of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine

All present enzymatic activity of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine:
2.7.1.20;

Protein crystallography data

The structure of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine, PDB code: 5kb6 was solved by R.R.Oliveira, R.M.Neto, C.C.Polo, C.C.C.Tonoli, M.T.Murakami, K.G.Franchini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.76 / 1.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.839, 82.159, 89.189, 90.00, 92.69, 90.00
R / Rfree (%) 14.1 / 15.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine (pdb code 5kb6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine, PDB code: 5kb6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5kb6

Go back to Chlorine Binding Sites List in 5kb6
Chlorine binding site 1 out of 2 in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:12.5
occ:1.00
H A:ASN30 2.3 12.2 1.0
H A:THR82 2.3 10.0 1.0
HB3 A:SER81 2.9 11.4 1.0
HA3 A:GLY29 3.1 12.0 1.0
HB3 A:ALA184 3.1 13.4 1.0
OG1 A:THR82 3.2 11.5 1.0
HB2 A:ASN30 3.2 13.8 1.0
O A:HOH631 3.2 12.8 1.0
N A:ASN30 3.3 11.6 1.0
N A:THR82 3.3 10.4 1.0
HG1 A:THR82 3.3 11.6 0.0
HB A:THR82 3.3 11.4 1.0
H A:SER81 3.5 11.4 1.0
HB2 A:PHE186 3.5 13.1 1.0
HD2 A:PHE186 3.6 14.2 1.0
CB A:THR82 3.7 11.1 1.0
CA A:GLY29 3.8 11.8 1.0
CB A:SER81 3.8 11.5 1.0
CB A:ALA184 3.9 13.3 1.0
HB1 A:ALA184 3.9 13.2 1.0
N A:SER81 3.9 11.9 1.0
CB A:ASN30 4.0 13.3 1.0
HA2 A:GLY29 4.0 11.4 1.0
C A:GLY29 4.1 11.2 1.0
CA A:THR82 4.1 10.4 1.0
CA A:ASN30 4.1 12.1 1.0
HB2 A:ALA184 4.2 13.0 1.0
CA A:SER81 4.2 11.5 1.0
O A:ASN30 4.2 14.2 1.0
C A:SER81 4.2 11.0 1.0
HB2 A:SER81 4.3 11.8 1.0
CB A:PHE186 4.3 13.6 1.0
HD22 A:ASN30 4.4 17.2 1.0
CG A:ASN30 4.4 15.4 1.0
CD2 A:PHE186 4.4 14.3 1.0
H A:GLN83 4.4 10.5 1.0
ND2 A:ASN30 4.5 18.1 1.0
HB3 A:PHE186 4.5 13.8 1.0
H A:ALA184 4.5 10.7 1.0
HB2 A:PHE187 4.5 12.2 1.0
C A:ASN30 4.6 12.6 1.0
HA A:THR82 4.7 10.9 1.0
OG A:SER81 4.7 12.5 1.0
HB3 A:ASN30 4.7 13.5 1.0
C A:GLY80 4.8 11.6 1.0
H A:PHE187 4.8 12.7 1.0
HG A:SER81 4.8 12.5 0.0
CG A:PHE186 4.9 13.5 1.0
HD21 A:ASN30 5.0 17.3 1.0
HA3 A:GLY80 5.0 12.4 1.0
HA A:ASN30 5.0 12.6 1.0
HE1 A:PHE102 5.0 10.9 1.0

Chlorine binding site 2 out of 2 in 5kb6

Go back to Chlorine Binding Sites List in 5kb6
Chlorine binding site 2 out of 2 in the High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:13.1
occ:1.00
H B:ASN30 2.3 12.5 1.0
H B:THR82 2.3 10.7 1.0
HB3 B:SER81 2.9 12.1 1.0
HB3 B:ALA184 3.1 14.0 1.0
HA3 B:GLY29 3.1 12.2 1.0
OG1 B:THR82 3.2 12.3 1.0
HB2 B:ASN30 3.2 14.3 1.0
O B:HOH634 3.2 13.8 1.0
N B:ASN30 3.3 12.0 1.0
N B:THR82 3.3 10.9 1.0
HG1 B:THR82 3.3 12.3 0.0
HB B:THR82 3.4 11.9 1.0
H B:SER81 3.4 12.8 1.0
HB2 B:PHE186 3.4 13.8 1.0
HD2 B:PHE186 3.6 15.1 1.0
CB B:THR82 3.7 11.7 1.0
CA B:GLY29 3.8 11.9 1.0
CB B:ALA184 3.8 13.5 1.0
CB B:SER81 3.9 12.2 1.0
N B:SER81 3.9 12.5 1.0
HB1 B:ALA184 3.9 13.7 1.0
HA2 B:GLY29 4.0 11.7 1.0
CB B:ASN30 4.0 14.1 1.0
C B:GLY29 4.1 11.7 1.0
CA B:THR82 4.1 10.6 1.0
CA B:ASN30 4.1 12.5 1.0
O B:HOH627 4.1 46.4 1.0
HB2 B:ALA184 4.1 13.2 1.0
CA B:SER81 4.2 11.8 1.0
O B:ASN30 4.2 14.2 1.0
C B:SER81 4.2 11.1 1.0
O B:HOH690 4.3 39.3 1.0
CB B:PHE186 4.3 14.5 1.0
HB2 B:SER81 4.3 12.4 1.0
CD2 B:PHE186 4.3 15.3 1.0
H B:GLN83 4.4 10.9 1.0
HD22 B:ASN30 4.4 18.2 1.0
CG B:ASN30 4.4 16.7 1.0
HB3 B:PHE186 4.4 14.9 1.0
H B:ALA184 4.5 10.5 1.0
C B:ASN30 4.5 12.6 1.0
HB2 B:PHE187 4.6 13.2 1.0
ND2 B:ASN30 4.6 19.2 1.0
HA B:THR82 4.7 11.1 1.0
OG B:SER81 4.7 12.9 1.0
HB3 B:ASN30 4.8 13.6 1.0
C B:GLY80 4.8 12.2 1.0
CG B:PHE186 4.8 14.4 1.0
H B:PHE187 4.8 13.5 1.0
HG B:SER81 4.9 12.9 0.0
HA3 B:GLY80 4.9 13.1 1.0
HE1 B:PHE102 5.0 12.2 1.0
HA B:ASN30 5.0 13.2 1.0

Reference:

R.R.Oliveira, R.M.Neto, C.C.Polo, C.C.C.Tonoli, M.T.Murakami, K.G.Franchini. High-Resolution Structure of the Adenosine Kinase From Mus Musculus in Complex with Adenosine To Be Published.
Page generated: Sat Dec 12 11:56:10 2020

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