Atomistry » Chlorine » PDB 5kdt-5kmu » 5kid
Atomistry »
  Chlorine »
    PDB 5kdt-5kmu »
      5kid »

Chlorine in PDB 5kid: Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications

Protein crystallography data

The structure of Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications, PDB code: 5kid was solved by P.B.Rupert, R.K.Strong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.15
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 115.547, 115.547, 118.028, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 26.3

Other elements in 5kid:

The structure of Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications also contains other interesting chemical elements:

Thorium (Th) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications (pdb code 5kid). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications, PDB code: 5kid:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5kid

Go back to Chlorine Binding Sites List in 5kid
Chlorine binding site 1 out of 2 in the Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:57.4
occ:1.00
OH A:TYR138 2.9 45.1 1.0
OG1 A:THR54 3.1 38.7 1.0
NH2 A:ARG81 3.6 51.4 1.0
CE1 A:TYR138 3.7 42.1 1.0
CZ A:TYR138 3.7 40.5 1.0
CB A:THR54 3.9 37.7 1.0
CG2 A:THR54 4.0 38.1 1.0
CE2 A:TYR52 4.0 41.4 1.0
OH A:TYR52 4.1 46.8 1.0
OG A:SER68 4.3 41.8 1.0
CG2 A:VAL33 4.4 38.2 1.0
CZ A:PHE123 4.5 41.9 1.0
OG1 A:THR136 4.5 47.3 1.0
CZ A:TYR52 4.6 43.3 1.0
CG2 A:THR136 4.7 47.3 1.0
OH A:TYR56 4.9 41.7 1.0
CZ A:ARG81 4.9 56.4 1.0
CE1 A:PHE123 5.0 42.6 1.0
NZ A:LYS134 5.0 53.8 1.0

Chlorine binding site 2 out of 2 in 5kid

Go back to Chlorine Binding Sites List in 5kid
Chlorine binding site 2 out of 2 in the Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Tightening the Recognition of Tetravalent Zr and Th Complexes By the Siderophore-Binding Mammalian Protein Siderocalin For Theranostic Applications within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl204

b:56.9
occ:1.00
OH C:TYR138 2.7 32.6 1.0
OG1 C:THR54 3.0 40.2 1.0
CZ C:TYR138 3.6 34.5 1.0
CE1 C:TYR138 3.6 36.0 1.0
CB C:THR54 3.9 40.0 1.0
NH2 C:ARG81 3.9 52.4 1.0
CG2 C:THR54 4.0 37.8 1.0
CE2 C:TYR52 4.1 40.8 1.0
OH C:TYR52 4.4 45.1 1.0
OG C:SER68 4.4 43.5 1.0
CG2 C:VAL33 4.4 38.2 1.0
CZ C:PHE123 4.4 33.0 1.0
CG2 C:THR136 4.5 35.7 1.0
CZ C:TYR52 4.7 42.8 1.0
OH C:TYR56 4.8 32.3 1.0
CE1 C:PHE123 4.9 32.7 1.0
CE2 C:TYR138 4.9 36.4 1.0
CD1 C:TYR138 5.0 34.8 1.0

Reference:

I.Captain, G.J.Deblonde, P.B.Rupert, D.D.An, M.C.Illy, E.Rostan, C.Y.Ralston, R.K.Strong, R.J.Abergel. Engineered Recognition of Tetravalent Zirconium and Thorium By Chelator-Protein Systems: Toward Flexible Radiotherapy and Imaging Platforms. Inorg Chem V. 55 11930 2016.
ISSN: ISSN 1520-510X
PubMed: 27802058
DOI: 10.1021/ACS.INORGCHEM.6B02041
Page generated: Wed Oct 28 12:42:58 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy