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Chlorine in PDB 5krv: 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine

Enzymatic activity of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine

All present enzymatic activity of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine:
1.1.1.267;

Protein crystallography data

The structure of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine, PDB code: 5krv was solved by N.Ussin, R.W.Abdulsalam, P.Magee, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 65.165, 149.129, 245.089, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 21.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine (pdb code 5krv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine, PDB code: 5krv:

Chlorine binding site 1 out of 1 in 5krv

Go back to Chlorine Binding Sites List in 5krv
Chlorine binding site 1 out of 1 in the 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus in Complex Arginine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:88.0
occ:1.00
 NZ A:LYS228 3.4 53.9 1.0
O A:HOH636 3.4 66.7 1.0
O A:HOH650 3.5 61.5 1.0
ND2 A:ASN227 3.6 68.9 1.0
N A:SER186 3.6 53.0 1.0
CE A:LYS228 3.8 55.1 1.0
CA A:GLY185 3.9 49.8 1.0
OE2 A:GLU152 4.1 59.2 1.0
OG A:SER186 4.2 57.8 1.0
C A:GLY185 4.3 51.4 1.0
CB A:SER186 4.4 57.4 1.0
CA A:SER186 4.6 55.2 1.0
CG A:ASN227 4.7 64.0 1.0
OD1 A:ASN227 4.9 67.6 1.0

Reference:

N.K.Ussin, A.M.Bagnell, L.R.Offermann, R.Abdulsalam, M.L.Perdue, P.Magee, M.Chruszcz. Structural Characterization of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Vibrio Vulnificus. Biochim Biophys Acta V.1866 1209 2018PROTEINS Proteom.
ISSN: ISSN 1878-1454
PubMed: 30278288
DOI: 10.1016/J.BBAPAP.2018.09.008
Page generated: Sat Dec 12 11:57:23 2020

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