Atomistry » Chlorine » PDB 5kp3-5kvg » 5ksr
Atomistry »
  Chlorine »
    PDB 5kp3-5kvg »
      5ksr »

Chlorine in PDB 5ksr: Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).

Enzymatic activity of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).

All present enzymatic activity of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).:
3.1.3.5;

Protein crystallography data

The structure of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger)., PDB code: 5ksr was solved by A.T.P.Machado, E.M.B.Fonseca, M.A.Dos Reis, A.M.Saraiva, C.A.Dos Santos, M.A.De Toledo, I.Polikarpov, A.P.De Souza, R.De Aparicio, J.Iulek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.25 / 1.96
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 172.336, 84.170, 87.310, 90.00, 96.62, 90.00
R / Rfree (%) 19.6 / 23.8

Other elements in 5ksr:

The structure of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger). also contains other interesting chemical elements:

Iodine (I) 6 atoms
Manganese (Mn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger). (pdb code 5ksr). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger)., PDB code: 5ksr:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5ksr

Go back to Chlorine Binding Sites List in 5ksr
Chlorine binding site 1 out of 4 in the Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:31.3
occ:1.00
 OG1 A:THR106 3.1 16.3 1.0
OD2 A:ASP8 3.4 32.1 1.0
OG A:SER104 3.5 19.8 1.0
N A:THR106 3.5 14.5 1.0
ND2 A:ASN96 3.6 14.6 1.0
O A:HOH605 3.6 28.1 1.0
N A:GLY105 3.7 14.8 1.0
ND2 A:ASN92 3.7 22.8 1.0
OD1 A:ASN96 3.8 26.3 1.0
MN A:MN501 3.8 41.8 1.0
CB A:THR106 3.9 16.8 1.0
OD1 A:ASN92 4.0 21.6 1.0
CG A:ASN92 4.0 23.9 1.0
CG A:ASN96 4.1 20.5 1.0
CG A:ASP8 4.3 36.6 1.0
CA A:THR106 4.3 13.6 1.0
CA A:GLY105 4.4 18.3 1.0
C A:SER104 4.4 14.8 1.0
CB A:SER104 4.4 20.9 1.0
CB A:ASP8 4.4 32.7 1.0
C A:GLY105 4.4 15.5 1.0
CA A:SER104 4.5 17.6 1.0
O A:HOH708 4.7 49.4 1.0

Chlorine binding site 2 out of 4 in 5ksr

Go back to Chlorine Binding Sites List in 5ksr
Chlorine binding site 2 out of 4 in the Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:31.7
occ:1.00
 O B:HOH692 2.4 47.6 1.0
OG1 B:THR106 3.1 16.2 1.0
OG B:SER104 3.4 21.0 1.0
O B:HOH604 3.5 37.1 1.0
N B:THR106 3.5 15.6 1.0
OD2 B:ASP8 3.6 30.3 1.0
OD1 B:ASN96 3.6 21.6 1.0
MN B:MN501 3.7 43.6 1.0
ND2 B:ASN96 3.7 21.8 1.0
N B:GLY105 3.8 17.0 1.0
ND2 B:ASN92 3.8 22.2 1.0
CB B:THR106 3.8 14.6 1.0
OD1 B:ASN92 4.0 22.9 1.0
CG B:ASN92 4.1 22.0 1.0
CG B:ASN96 4.1 24.0 1.0
CA B:THR106 4.3 14.5 1.0
CG B:ASP8 4.4 34.9 1.0
CA B:GLY105 4.4 19.3 1.0
O B:HOH697 4.4 53.2 1.0
CB B:SER104 4.4 19.2 1.0
CB B:ASP8 4.4 31.9 1.0
C B:GLY105 4.4 17.8 1.0
C B:SER104 4.4 15.7 1.0
CA B:SER104 4.5 17.3 1.0

Chlorine binding site 3 out of 4 in 5ksr

Go back to Chlorine Binding Sites List in 5ksr
Chlorine binding site 3 out of 4 in the Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger). within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl504

b:37.4
occ:1.00
 O C:HOH630 2.6 50.5 1.0
OG1 C:THR106 3.0 22.4 1.0
OG C:SER104 3.4 20.5 1.0
N C:THR106 3.5 18.6 1.0
ND2 C:ASN96 3.5 18.0 1.0
OD2 C:ASP8 3.6 29.7 1.0
OD1 C:ASN96 3.6 28.7 1.0
CB C:THR106 3.7 24.2 1.0
N C:GLY105 3.8 20.6 1.0
ND2 C:ASN92 3.8 22.3 1.0
O C:HOH613 3.8 22.1 1.0
MN C:MN501 3.8 35.5 1.0
OD1 C:ASN92 3.8 21.3 1.0
OD1 C:ASP8 3.9 32.8 1.0
CG C:ASP8 4.0 32.6 1.0
CG C:ASN96 4.0 26.1 1.0
CG C:ASN92 4.0 21.6 1.0
CA C:THR106 4.2 21.4 1.0
CB C:SER104 4.3 19.7 1.0
CA C:GLY105 4.4 21.9 1.0
C C:SER104 4.4 20.1 1.0
C C:GLY105 4.4 19.8 1.0
CA C:SER104 4.5 18.0 1.0
O C:HOH675 4.8 51.3 1.0
O C:HOH691 4.8 30.2 1.0

Chlorine binding site 4 out of 4 in 5ksr

Go back to Chlorine Binding Sites List in 5ksr
Chlorine binding site 4 out of 4 in the Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Stationary Phase Survival Protein E (Sure) From Xylella Fastidiosa - Xfsure-Tb (Tetramer Bigger). within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl503

b:36.9
occ:1.00
 OG1 D:THR106 3.1 20.9 1.0
OG D:SER104 3.3 23.8 1.0
ND2 D:ASN96 3.5 21.0 1.0
N D:THR106 3.5 18.3 1.0
OD2 D:ASP8 3.6 33.4 1.0
O D:HOH621 3.6 47.8 1.0
OD1 D:ASN96 3.7 27.4 1.0
N D:GLY105 3.8 18.5 1.0
CB D:THR106 3.8 25.0 1.0
MN D:MN501 3.8 37.4 1.0
ND2 D:ASN92 3.9 24.9 1.0
OD1 D:ASP8 3.9 34.7 1.0
OD1 D:ASN92 3.9 21.8 1.0
CG D:ASP8 4.0 33.8 1.0
CG D:ASN96 4.0 28.4 1.0
CG D:ASN92 4.0 24.4 1.0
CB D:SER104 4.2 22.2 1.0
CA D:THR106 4.3 19.5 1.0
C D:SER104 4.4 17.7 1.0
CA D:SER104 4.4 19.8 1.0
CA D:GLY105 4.4 21.1 1.0
C D:GLY105 4.5 19.8 1.0
O D:HOH697 4.6 33.7 1.0

Reference:

A.T.P.Machado, E.M.B.Fonseca, M.A.D.Reis, A.M.Saraiva, C.A.D.Santos, M.A.S.De Toledo, I.Polikarpov, A.P.De Souza, R.Aparicio, J.Iulek. Conformational Variability of the Stationary Phase Survival Protein E From Xylella Fastidiosa Revealed By X-Ray Crystallography, Small-Angle X-Ray Scattering Studies, and Normal Mode Analysis. Proteins V. 85 1931 2017.
ISSN: ESSN 1097-0134
PubMed: 28677327
DOI: 10.1002/PROT.25347
Page generated: Fri Jul 26 10:52:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy