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Chlorine in PDB 5kt9: Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide

Enzymatic activity of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide

All present enzymatic activity of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide:
1.11.1.21;

Protein crystallography data

The structure of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide, PDB code: 5kt9 was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.88
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 100.854, 113.790, 174.633, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.3

Other elements in 5kt9:

The structure of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide (pdb code 5kt9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide, PDB code: 5kt9:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5kt9

Go back to Chlorine Binding Sites List in 5kt9
Chlorine binding site 1 out of 2 in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:40.4
occ:1.00
 O A:HOH1465 2.8 21.5 1.0
O A:HOH1510 3.2 23.3 1.0
O A:HOH1590 3.3 18.2 1.0
N A:GLY124 3.3 20.2 1.0
CG2 A:VAL200 3.6 30.6 1.0
CG A:GLU198 3.7 46.0 1.0
CB A:GLU198 3.8 41.9 1.0
CA A:GLY124 4.0 21.2 1.0
CB A:ARG123 4.2 21.0 1.0
C A:ARG123 4.3 22.3 1.0
CA A:ARG123 4.3 20.4 1.0
CD A:GLU198 4.5 52.9 1.0
OE1 A:GLU198 4.5 53.5 1.0
NA A:NA802 4.5 22.9 1.0
OE1 A:GLU128 4.6 33.9 1.0
CG A:ARG123 4.7 20.5 1.0
O A:GLY124 4.7 21.8 1.0
C A:GLY124 4.7 19.9 1.0
O A:HOH1213 4.9 21.7 1.0
OE2 A:GLU128 5.0 39.0 1.0
CG A:GLN130 5.0 24.0 1.0

Chlorine binding site 2 out of 2 in 5kt9

Go back to Chlorine Binding Sites List in 5kt9
Chlorine binding site 2 out of 2 in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei Treated with Hydrogen Peroxide and Carbon Monoxide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl804

b:36.8
occ:1.00
 O B:HOH1438 3.0 25.1 1.0
O B:HOH1465 3.0 40.1 1.0
O B:HOH1435 3.1 26.2 1.0
O B:HOH1542 3.1 16.4 1.0
N B:GLY124 3.3 20.0 1.0
CG2 B:VAL200 3.6 27.0 1.0
CG B:GLU198 3.7 42.4 1.0
CB B:GLU198 3.7 37.7 1.0
CA B:GLY124 4.0 20.2 1.0
O B:HOH1446 4.3 40.9 1.0
OE1 B:GLU128 4.3 31.2 1.0
CB B:ARG123 4.3 18.6 1.0
C B:ARG123 4.4 20.1 1.0
CA B:ARG123 4.4 17.7 1.0
CD B:GLU198 4.5 48.1 1.0
NA B:NA803 4.6 22.5 1.0
O B:GLY124 4.7 22.6 1.0
C B:GLY124 4.7 19.5 1.0
CG B:GLN130 4.7 23.9 1.0
O B:HOH1196 4.8 21.7 1.0
OE1 B:GLU198 4.8 46.7 1.0
CG B:ARG123 4.8 19.0 1.0
CD B:GLU128 4.9 29.9 1.0

Reference:

P.C.Loewen, P.C.Loewen. N/A N/A.
Page generated: Fri Jul 26 10:52:58 2024

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