Chlorine in PDB 5ku1: HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State

The structure of HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State, PDB code: 5ku1 was solved by J.L.Klosowiak, P.J.Focia, S.E.Rice, D.M.Freymann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.81 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	73.136, 73.136, 217.142, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 26.4

The structure of HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Chlorine atom in the HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State (pdb code 5ku1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State, PDB code: 5ku1:

Chlorine binding site 1 out of 1 in the HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of HMIRO1 Ef Hand and Cgtpase Domains in the Gdp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl704 b:63.7 occ:1.00 N A:GLU478 3.3 66.3 1.0 NZ A:LYS431 3.3 62.8 1.0 CD A:LYS427 3.4 83.3 1.0 CA A:LYS427 3.6 66.9 1.0 CE A:LYS431 3.8 59.0 1.0 CA A:SER477 3.9 56.5 1.0 CB A:GLU478 3.9 66.2 1.0 CB A:LYS427 4.0 67.2 1.0 N A:LYS427 4.0 58.9 1.0 C A:SER477 4.1 63.5 1.0 O2B A:GDP701 4.2 63.5 1.0 CA A:GLU478 4.2 67.3 1.0 CG A:LYS427 4.3 79.1 1.0 CB A:SER477 4.3 56.0 1.0 O A:VAL426 4.4 65.2 1.0 C A:VAL426 4.4 57.8 1.0 CE A:LYS427 4.5 82.9 1.0 O A:GLY425 4.5 59.4 1.0 OG A:SER477 4.6 69.5 1.0 C A:LYS427 4.8 64.3 1.0 N A:ASN428 4.9 60.0 1.0 O A:ILE476 4.9 58.8 1.0 OE1 A:GLU478 4.9 81.0 1.0

J.L.Klosowiak, S.Park, K.P.Smith, M.E.French, P.J.Focia, D.M.Freymann, S.E.Rice. Structural Insights Into Parkin Substrate Lysine Targeting From Minimal Miro Substrates. Sci Rep V. 6 33019 2016.
ISSN: ESSN 2045-2322
PubMed: 27605430
DOI: 10.1038/SREP33019