Chlorine in PDB 5kvg: Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii

The structure of Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii, PDB code: 5kvg was solved by H.Zhao, C.A.Nelson, D.H.Fremont, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.97 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.110, 82.930, 93.260, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 17.9

The binding sites of Chlorine atom in the Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii (pdb code 5kvg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii, PDB code: 5kvg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl301 b:29.7 occ:1.00 O H:HOH659 2.7 41.2 1.0 OG H:SER163 3.0 22.9 1.0 ND2 H:ASN209 3.2 15.8 1.0 N H:SER163 3.5 17.5 1.0 CA H:ASN162 3.6 14.7 1.0 C H:ASN162 3.7 16.5 1.0 CB H:THR206 3.9 13.4 1.0 CB H:SER163 4.0 20.2 1.0 CG H:ASN209 4.1 14.7 1.0 OD1 H:ASN209 4.2 16.4 1.0 CG2 H:THR206 4.2 15.0 1.0 CA H:SER163 4.3 19.1 1.0 N H:ASN162 4.3 13.5 1.0 OD1 H:ASN162 4.4 16.7 1.0 O H:ASN162 4.5 17.5 1.0 OG1 H:THR206 4.5 16.5 1.0 O H:HOH468 4.5 29.6 1.0 CB H:ASN162 4.7 14.7 1.0 O H:THR206 4.8 13.5 1.0 CG H:ASN162 5.0 16.0 1.0

Chlorine binding site 2 out of 2 in the Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Zika Specific Antibody, Zv-67, Bound to Zika Envelope Diii within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl302 b:11.2 occ:0.92 O E:HOH588 3.1 13.1 1.0 N H:VAL101 3.1 9.5 1.0 NE H:ARG94 3.2 11.3 1.0 NH1 H:ARG94 3.5 13.9 1.0 N H:TYR102 3.6 10.3 1.0 CD2 H:TYR102 3.8 13.1 1.0 CZ H:ARG94 3.8 11.6 1.0 CB H:VAL101 3.8 10.7 1.0 CB H:ARG94 3.8 10.3 1.0 O H:ARG94 3.8 11.5 1.0 CB H:ASN96 3.8 10.2 1.0 CA H:VAL101 3.9 10.3 1.0 CA H:SER99 4.0 9.6 1.0 C H:SER99 4.1 9.4 1.0 O H:GLY98 4.1 10.4 1.0 CG H:ARG94 4.2 11.2 1.0 CD H:ARG94 4.3 10.8 1.0 C H:ARG94 4.3 10.0 1.0 C H:VAL101 4.3 10.2 1.0 CG2 H:VAL101 4.3 11.0 1.0 CB H:TYR102 4.5 10.9 1.0 CG H:TYR102 4.6 12.1 1.0 CE2 H:TYR102 4.6 14.7 1.0 CA H:ARG94 4.6 9.5 1.0 CA H:TYR102 4.6 10.4 1.0 N H:ASN96 4.7 9.8 1.0 ND2 H:ASN96 4.7 10.7 1.0 NZ E:LYS394 4.8 11.8 1.0 CG H:ASN96 4.8 10.8 1.0 CA H:ASN96 4.9 10.0 1.0 CB H:SER99 4.9 9.6 1.0 O H:TYR102 4.9 11.1 1.0 C H:GLY98 4.9 9.4 1.0 C H:GLU95 5.0 9.7 1.0 N H:SER99 5.0 9.4 1.0

H.Zhao, E.Fernandez, K.A.Dowd, S.D.Speer, D.J.Platt, M.J.Gorman, J.Govero, C.A.Nelson, T.C.Pierson, M.S.Diamond, D.H.Fremont. Structural Basis of Zika Virus-Specific Antibody Protection. Cell V. 166 1016 2016.
ISSN: ISSN 1097-4172
PubMed: 27475895
DOI: 10.1016/J.CELL.2016.07.020