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Chlorine in PDB 5l2u: Oligomer Crystal Structure of Cc Chemokine 5 (CCL5)

Protein crystallography data

The structure of Oligomer Crystal Structure of Cc Chemokine 5 (CCL5), PDB code: 5l2u was solved by W.Liang, A.Wang, W.-J.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.65 / 2.28
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 121.799, 210.082, 126.718, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Oligomer Crystal Structure of Cc Chemokine 5 (CCL5) (pdb code 5l2u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Oligomer Crystal Structure of Cc Chemokine 5 (CCL5), PDB code: 5l2u:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5l2u

Go back to Chlorine Binding Sites List in 5l2u
Chlorine binding site 1 out of 2 in the Oligomer Crystal Structure of Cc Chemokine 5 (CCL5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Oligomer Crystal Structure of Cc Chemokine 5 (CCL5) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl102

b:63.0
occ:1.00
O A:HOH232 2.4 61.1 1.0
O A:HOH233 2.6 57.1 1.0
O A:HOH211 3.4 33.4 1.0
O A:HOH221 3.6 28.8 1.0
CE A:LYS55 3.8 53.6 1.0
CB A:ASN52 4.1 30.9 1.0
CB A:TYR14 4.1 27.8 1.0
ND2 A:ASN52 4.2 37.1 1.0
O A:ILE15 4.2 41.5 1.0
CG A:LYS55 4.3 36.4 1.0
CD2 A:TYR14 4.4 34.4 1.0
CA A:ALA16 4.5 45.1 1.0
CD A:LYS55 4.6 45.1 1.0
CG A:TYR14 4.7 29.2 1.0
CG A:ASN52 4.7 37.2 1.0
NZ A:LYS55 4.8 57.8 1.0
C A:ILE15 4.8 38.7 1.0
O A:TYR14 4.9 37.4 1.0
N A:ALA16 5.0 38.5 1.0

Chlorine binding site 2 out of 2 in 5l2u

Go back to Chlorine Binding Sites List in 5l2u
Chlorine binding site 2 out of 2 in the Oligomer Crystal Structure of Cc Chemokine 5 (CCL5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Oligomer Crystal Structure of Cc Chemokine 5 (CCL5) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl102

b:63.1
occ:1.00
O F:HOH207 3.5 33.1 1.0
O F:HOH221 3.7 27.0 1.0
CB F:TYR14 4.0 28.9 1.0
CB F:ASN52 4.1 29.6 1.0
CE F:LYS55 4.1 55.3 1.0
ND2 F:ASN52 4.2 39.8 1.0
O F:ILE15 4.2 43.2 1.0
CD2 F:TYR14 4.4 36.7 1.0
CG F:LYS55 4.4 35.9 1.0
CA F:ALA16 4.6 44.3 1.0
CG F:TYR14 4.6 31.6 1.0
CG F:ASN52 4.7 38.6 1.0
O F:TYR14 4.8 37.8 1.0
CD F:LYS55 4.9 45.7 1.0
C F:ILE15 4.9 40.9 1.0

Reference:

W.Liang, A.Wang, W.-J.Tang. High Resolution Oligomer Crystal Structure of Cc Chemokine 5 (CCL5) To Be Published.
Page generated: Sat Dec 12 11:58:07 2020

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