Chlorine in PDB 5l74: Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom

The structure of Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom, PDB code: 5l74 was solved by Y.Kong, B.J.C.Janssen, T.Malinauskas, V.R.Vangoor, C.H.Coles, R.Kaufmann, T.Ni, R.J.C.Gilbert, S.Padilla-Parra, R.J.Pasterkamp, E.Y.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.09 / 1.36
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	107.710, 44.560, 33.010, 90.00, 104.70, 90.00
R / Rfree (%)	17.5 / 20.3

The structure of Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Chlorine atom in the Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom (pdb code 5l74). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom, PDB code: 5l74:

Chlorine binding site 1 out of 1 in the Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Plexin A2 Extracellular Segment Domains 4-5 (PSI2-IPT2), Resolution 1.36 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl906 b:17.2 occ:1.00 N A:TYR677 3.2 14.8 1.0 N A:SER689 3.2 18.0 1.0 N A:ARG678 3.5 15.6 1.0 CB A:CYS675 3.6 13.6 1.0 CB A:TYR677 3.7 16.0 1.0 CB A:CYS688 3.7 15.1 1.0 C A:CYS675 3.7 10.2 1.0 N A:LYS676 3.7 13.9 1.0 CA A:TYR677 3.8 12.8 1.0 CB A:SER689 3.8 29.0 1.0 CD2 A:TYR677 3.8 20.5 1.0 CA A:CYS675 3.8 13.9 1.0 CG A:ARG678 3.9 18.6 1.0 CA A:GLY693 4.0 17.3 1.0 CA A:CYS688 4.0 16.1 1.0 C A:TYR677 4.1 15.6 1.0 OG A:SER689 4.1 39.1 1.0 CA A:SER689 4.1 20.1 1.0 C A:CYS688 4.1 20.1 1.0 O A:GLY693 4.2 15.8 1.0 CG A:TYR677 4.2 14.9 1.0 C A:LYS676 4.3 13.6 1.0 CB A:ARG678 4.3 17.7 1.0 O A:CYS675 4.3 15.0 1.0 C A:GLY693 4.3 15.9 1.0 CA A:ARG678 4.5 17.5 1.0 CA A:LYS676 4.6 13.9 1.0 SG A:CYS688 4.6 17.2 1.0 N A:PHE690 4.7 20.6 1.0 CD A:ARG678 4.7 27.3 1.0 SG A:CYS675 4.7 16.3 1.0 CE2 A:TYR677 4.9 23.4 1.0 C A:SER689 4.9 17.0 1.0 O A:PHE690 4.9 17.8 1.0 N A:GLY693 5.0 15.7 1.0

Y.Kong, B.J.Janssen, T.Malinauskas, V.R.Vangoor, C.H.Coles, R.Kaufmann, T.Ni, R.J.Gilbert, S.Padilla-Parra, R.J.Pasterkamp, E.Y.Jones. Structural Basis For Plexin Activation and Regulation. Neuron V. 91 548 2016.
ISSN: ISSN 1097-4199
PubMed: 27397516
DOI: 10.1016/J.NEURON.2016.06.018