Chlorine in PDB 5laf: Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy)

All present enzymatic activity of Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy):
3.2.1.17;

The structure of Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy), PDB code: 5laf was solved by A.Castellvi, J.Juanhuix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.56 / 1.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.110, 79.110, 37.897, 90.00, 90.00, 90.00
R / Rfree (%)	14.4 / 17.6

The binding sites of Chlorine atom in the Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy) (pdb code 5laf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy), PDB code: 5laf:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:24.3 occ:1.00 OH A:TYR23 2.9 14.6 1.0 O A:HOH351 3.5 25.3 1.0 CZ A:TYR23 3.6 11.4 1.0 CE2 A:TYR23 3.7 11.1 1.0 CA A:GLY104 4.1 13.8 1.0 O A:HOH319 4.6 29.2 1.0 O A:ARG21 4.7 19.9 1.0 N A:GLY104 4.7 14.2 1.0 CE1 A:TYR23 4.8 11.9 1.0 CD2 A:TYR23 5.0 12.3 1.0

Chlorine binding site 2 out of 3 in the Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:29.6 occ:1.00 OG A:SER24 3.0 20.9 1.0 N A:GLY26 3.1 12.2 1.0 CB A:SER24 3.4 17.1 1.0 CA A:GLY26 3.5 11.4 1.0 CA A:GLN121 3.7 23.4 1.0 CD1 A:ILE124 3.8 26.3 1.0 CB A:GLN121 3.9 31.7 1.0 N A:LEU25 4.1 14.0 1.0 N A:GLN121 4.1 22.1 1.0 C A:SER24 4.2 14.7 1.0 C A:LEU25 4.2 11.7 1.0 CG A:GLN121 4.3 40.8 1.0 O A:VAL120 4.3 18.5 1.0 CG1 A:ILE124 4.3 21.7 1.0 CG2 A:VAL120 4.4 19.9 1.0 C A:VAL120 4.4 20.6 1.0 CA A:SER24 4.4 14.8 1.0 CA A:LEU25 4.6 13.2 1.0 C A:GLY26 4.6 11.3 1.0 O A:SER24 4.6 13.7 1.0 N A:ASN27 4.7 10.8 1.0 C A:GLN121 4.9 21.3 1.0 CB A:LEU25 4.9 15.4 1.0

Chlorine binding site 3 out of 3 in the Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Room Temperature X-Ray Diffraction of Tetragonal Hewl with 1M of Uridine. First Data Set (0.31 Mgy) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:25.2 occ:1.00 O A:SER60 2.2 16.2 1.0 O A:ARG73 2.4 25.9 1.0 O A:CYS64 2.4 14.3 1.0 O A:HOH376 2.4 25.8 1.0 OG A:SER72 2.5 23.9 1.0 O A:HOH352 2.6 18.6 1.0 CB A:SER72 3.2 24.7 1.0 C A:CYS64 3.4 12.7 1.0 C A:SER60 3.5 12.5 1.0 C A:ARG73 3.5 23.1 1.0 N A:ARG73 3.9 21.9 1.0 CA A:ASN65 3.9 15.7 1.0 C A:SER72 4.0 27.7 1.0 CA A:SER60 4.1 11.7 1.0 N A:ASN65 4.1 13.3 1.0 CA A:SER72 4.3 26.1 1.0 N A:ASN74 4.3 21.3 1.0 CA A:ARG73 4.3 23.2 1.0 N A:CYS64 4.4 14.0 1.0 CB A:SER60 4.4 12.1 1.0 C A:ARG61 4.4 20.6 1.0 O A:ARG61 4.5 19.7 1.0 O A:SER72 4.5 28.0 1.0 N A:ARG61 4.5 14.7 1.0 CA A:CYS64 4.5 13.5 1.0 CA A:ASN74 4.6 17.7 1.0 CA A:ARG61 4.7 18.9 1.0 CB A:ASN74 4.7 18.9 1.0 N A:TRP62 4.7 17.3 1.0 OD1 A:ASN65 4.7 25.3 1.0 CB A:THR69 4.8 16.0 1.0 N A:ASP66 4.8 11.9 1.0 O A:HOH380 4.8 18.9 1.0 CB A:ASN65 4.8 17.1 1.0 O A:HOH389 4.9 45.8 1.0 N A:TRP63 4.9 13.4 1.0 C A:ASN65 5.0 12.1 1.0

E.Crosas, A.Castellvi, I.Crespo, D.Fulla, F.Gil-Ortiz, G.Fuertes, C.S.Kamma-Lorger, M.Malfois, M.A.Aranda, J.Juanhuix. Uridine As A New Scavenger For Synchrotron-Based Structural Biology Techniques. J Synchrotron Radiat V. 24 53 2017.
ISSN: ESSN 1600-5775
PubMed: 28009546
DOI: 10.1107/S1600577516018452