Chlorine in PDB 5ldz: Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase

Enzymatic activity of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase

All present enzymatic activity of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase:
3.1.3.11;

Protein crystallography data

The structure of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase, PDB code: 5ldz was solved by A.Ruf, T.Tetaz, B.Schott, C.Joseph, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.80 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 121.519, 121.519, 316.580, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 23.9

Other elements in 5ldz:

The structure of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase (pdb code 5ldz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase, PDB code: 5ldz:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5ldz

Go back to Chlorine Binding Sites List in 5ldz
Chlorine binding site 1 out of 3 in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl409

b:78.1
occ:1.00
 N B:LYS205 3.3 34.9 1.0
O B:HOH525 3.7 47.7 1.0
CA B:LYS204 3.8 37.2 1.0
CB B:LYS205 4.0 40.9 1.0
CG B:LYS205 4.0 62.3 1.0
C B:LYS204 4.1 37.8 1.0
CA B:LYS205 4.2 36.7 1.0
CB B:LYS204 4.3 40.9 1.0
CG B:LYS204 4.4 53.1 1.0

Chlorine binding site 2 out of 3 in 5ldz

Go back to Chlorine Binding Sites List in 5ldz
Chlorine binding site 2 out of 3 in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl407

b:78.5
occ:1.00
 O D:HOH573 2.9 61.7 1.0
N D:LYS205 3.3 41.7 1.0
CB D:LYS205 3.9 46.1 1.0
CA D:LYS204 3.9 38.0 1.0
C D:LYS204 4.1 43.6 1.0
CA D:LYS205 4.2 41.8 1.0
CB D:LYS204 4.3 40.9 1.0
CG D:LYS204 4.5 54.4 1.0

Chlorine binding site 3 out of 3 in 5ldz

Go back to Chlorine Binding Sites List in 5ldz
Chlorine binding site 3 out of 3 in the Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Quadruple Space Group Ambiguity Due to Rotational and Translational Non-Crystallographic Symmetry in Human Liver Fructose-1,6- Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl407

b:73.1
occ:1.00
 N F:LYS205 3.5 40.6 1.0
CA F:LYS204 4.1 37.5 1.0
CG F:LYS205 4.1 58.7 1.0
CB F:LYS205 4.1 43.7 1.0
C F:LYS204 4.3 41.3 1.0
CA F:LYS205 4.5 40.5 1.0
CB F:LYS204 4.5 41.5 1.0
CG F:LYS204 4.6 52.2 1.0

Reference:

A.Ruf, T.Tetaz, B.Schott, C.Joseph, M.G.Rudolph. Quadruple Space-Group Ambiguity Owing to Rotational and Translational Noncrystallographic Symmetry in Human Liver Fructose-1,6-Bisphosphatase. Acta Crystallogr D Struct V. 72 1212 2016BIOL.
ISSN: ISSN 2059-7983
PubMed: 27841754
DOI: 10.1107/S2059798316016715
Page generated: Sat Dec 12 12:01:51 2020

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