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Chlorine in PDB 5le5: Native Human 20S Proteasome at 1.8 Angstrom

Enzymatic activity of Native Human 20S Proteasome at 1.8 Angstrom

All present enzymatic activity of Native Human 20S Proteasome at 1.8 Angstrom:
3.4.25.1;

Protein crystallography data

The structure of Native Human 20S Proteasome at 1.8 Angstrom, PDB code: 5le5 was solved by J.Schrader, F.Henneberg, R.Mata, K.Tittmann, T.R.Schneider, H.Stark, G.Bourenkov, A.Chari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 170.66 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 113.440, 202.770, 316.000, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.2

Other elements in 5le5:

The structure of Native Human 20S Proteasome at 1.8 Angstrom also contains other interesting chemical elements:

Magnesium (Mg) 10 atoms
Potassium (K) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 57;

Binding sites:

The binding sites of Chlorine atom in the Native Human 20S Proteasome at 1.8 Angstrom (pdb code 5le5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 57 binding sites of Chlorine where determined in the Native Human 20S Proteasome at 1.8 Angstrom, PDB code: 5le5:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 57 in 5le5

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Chlorine binding site 1 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:45.4
occ:1.00
 O A:HOH486 2.9 57.9 1.0
O C:HOH420 3.0 39.9 1.0
N A:SER6 3.1 30.9 1.0
NH2 C:ARG5 3.7 56.1 1.0
CD2 A:PHE7 3.7 29.7 1.0
CA A:TYR5 3.8 31.8 1.0
CB A:SER6 3.8 34.2 1.0
CE2 A:PHE7 3.8 29.9 1.0
C A:TYR5 3.9 30.9 1.0
CA A:SER6 4.0 31.2 1.0
N B:SER2 4.2 44.9 1.0
OG A:SER6 4.3 37.7 1.0
O A:GLY4 4.3 45.8 1.0
CB A:TYR5 4.4 30.6 1.0
N A:PHE7 4.5 29.6 1.0
CD1 C:TYR3 4.6 38.6 1.0
CZ C:ARG5 4.6 55.9 1.0
C A:SER6 4.7 30.7 1.0
NH1 C:ARG5 4.7 60.0 1.0
CD2 A:TYR5 4.8 31.2 1.0
CE1 C:TYR3 4.9 38.4 1.0
CG A:PHE7 4.9 29.3 1.0
N A:TYR5 4.9 34.9 1.0

Chlorine binding site 2 out of 57 in 5le5

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Chlorine binding site 2 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:61.4
occ:1.00
 N A:ARG219 3.4 41.2 1.0
CA A:ARG218 3.9 40.9 1.0
CB A:ARG219 4.1 42.7 1.0
C A:ARG218 4.2 41.0 1.0
CZ A:ARG219 4.2 41.6 1.0
NH2 A:ARG219 4.3 43.5 1.0
CA A:ARG219 4.3 43.0 1.0
CB A:ARG218 4.3 43.2 1.0
CG A:ARG219 4.4 42.5 1.0
CG A:PRO66 4.4 33.5 1.0
NH1 A:ARG219 4.4 40.1 1.0
NE A:ARG219 4.5 42.4 1.0
CD A:PRO66 4.6 33.3 1.0
CB A:PRO66 4.7 33.4 1.0
CE2 A:PHE217 4.9 38.5 1.0
O A:PHE217 4.9 39.3 1.0
O A:ARG219 5.0 46.6 1.0

Chlorine binding site 3 out of 57 in 5le5

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Chlorine binding site 3 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:42.3
occ:1.00
 O H:HOH493 3.1 41.1 1.0
NH2 A:ARG90 3.1 28.2 1.0
O H:HOH414 3.1 53.1 1.0
O A:HOH474 3.5 41.0 1.0
ND1 A:HIS87 3.6 42.3 1.0
CA A:HIS87 3.7 30.4 1.0
CB A:HIS87 3.7 32.6 1.0
CD A:ARG90 3.7 27.8 1.0
NZ G:LYS116 4.0 48.9 1.0
CG A:HIS87 4.1 37.3 1.0
CZ A:ARG90 4.1 28.5 1.0
N A:HIS87 4.2 27.4 1.0
OG H:SER69 4.2 40.2 1.0
CB H:SER69 4.3 35.0 1.0
O A:HOH484 4.3 44.9 1.0
NE A:ARG90 4.4 28.0 1.0
CG1 A:VAL86 4.5 28.0 1.0
CA H:SER69 4.6 34.0 1.0
C A:VAL86 4.7 27.3 1.0
CE1 A:HIS87 4.7 41.7 1.0
O A:VAL86 4.8 25.9 1.0
CE G:LYS116 4.8 42.4 1.0
C A:HIS87 4.9 29.2 1.0
CG A:ARG90 4.9 27.5 1.0
O A:HOH471 5.0 37.9 1.0

Chlorine binding site 4 out of 57 in 5le5

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Chlorine binding site 4 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:52.8
occ:1.00
 O A:HOH465 3.0 32.2 1.0
O A:HOH485 3.1 50.2 1.0
CG2 A:THR68 3.9 36.5 1.0
CB A:THR68 4.0 37.5 1.0
CB A:PRO103 4.1 36.4 1.0
NZ A:LYS69 4.1 51.1 1.0
CD2 A:TYR97 4.1 34.9 1.0
CA A:PRO103 4.1 35.3 1.0
NE2 A:GLN94 4.2 35.2 1.0
CG A:TYR97 4.4 33.3 1.0
CB A:TYR97 4.5 31.6 1.0
CG A:PRO103 4.6 38.1 1.0
OE1 H:GLU64 4.7 40.8 1.0
OE2 H:GLU64 4.7 43.5 1.0
CE2 A:TYR97 4.7 36.9 1.0
CE1 A:HIS70 4.9 43.0 1.0
CA A:THR68 4.9 37.2 1.0
OG1 A:THR68 5.0 40.6 1.0
ND1 A:HIS70 5.0 43.5 1.0

Chlorine binding site 5 out of 57 in 5le5

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Chlorine binding site 5 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:37.9
occ:1.00
 O B:HOH494 2.9 40.6 1.0
O I:HOH539 3.0 43.9 1.0
CL B:CL302 3.1 55.0 1.0
NE2 B:GLN95 3.2 32.5 1.0
N B:GLU70 3.3 40.2 1.0
CB B:ASN69 3.7 35.6 1.0
CA B:ASN69 3.9 36.1 1.0
CB B:GLU70 3.9 47.5 1.0
ND2 I:ASN71 4.0 32.4 1.0
C B:ASN69 4.0 38.3 1.0
OE1 B:GLU70 4.2 57.6 1.0
CA B:GLU70 4.2 43.7 1.0
CG I:ASN71 4.3 32.8 1.0
CD B:GLN95 4.4 32.9 1.0
CD2 B:LEU98 4.5 37.4 1.0
CB I:ASN71 4.7 32.1 1.0
O I:HOH458 4.7 38.6 1.0
OE1 B:GLN95 4.7 33.2 1.0
CG B:ASN69 4.8 37.4 1.0
OD1 I:ASN71 4.8 33.9 1.0
O B:HOH445 4.9 30.2 1.0
CG B:GLU70 4.9 54.0 1.0
CD B:GLU70 5.0 57.9 1.0

Chlorine binding site 6 out of 57 in 5le5

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Chlorine binding site 6 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:55.0
occ:1.00
 O B:HOH465 2.9 29.9 1.0
CL B:CL301 3.1 37.9 1.0
CB B:PRO104 3.6 38.0 1.0
CA B:PRO104 3.7 36.5 1.0
CD2 B:LEU98 3.8 37.4 1.0
ND2 B:ASN69 3.8 37.6 1.0
O I:HOH539 3.9 43.9 1.0
CB B:ASN69 4.0 35.6 1.0
CG B:ASN69 4.2 37.4 1.0
CD1 B:LEU98 4.3 37.1 1.0
CB B:LEU98 4.3 34.9 1.0
CG B:LEU98 4.3 36.5 1.0
N B:GLU70 4.5 40.2 1.0
NE2 B:GLN95 4.5 32.5 1.0
N B:PRO104 4.5 36.8 1.0
CB B:GLU70 4.7 47.5 1.0
CG B:PRO104 4.7 39.1 1.0
N B:ILE105 4.8 34.9 1.0
C B:PRO104 4.8 35.3 1.0
CD B:PRO104 5.0 38.8 1.0

Chlorine binding site 7 out of 57 in 5le5

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Chlorine binding site 7 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl301

b:56.0
occ:1.00
 N C:GLY162 3.2 47.6 1.0
O C:HOH428 3.3 47.8 1.0
O C:HOH453 3.6 52.0 1.0
CA C:ILE161 3.7 46.5 1.0
CG1 C:VAL26 3.8 43.1 1.0
C C:ILE161 3.9 47.4 1.0
O C:GLY162 4.0 51.1 1.0
CB C:ILE161 4.0 44.7 1.0
CA C:GLY162 4.1 48.6 1.0
CB C:ALA165 4.1 58.3 1.0
CG2 C:ILE161 4.4 44.2 1.0
CG C:LYS27 4.4 57.8 1.0
C C:GLY162 4.5 51.4 1.0
O C:HOH403 4.7 60.4 1.0
CB C:VAL26 4.8 42.7 1.0
CA C:LYS27 4.9 53.2 1.0
N C:LYS27 4.9 49.0 1.0
O C:ALA160 5.0 48.1 1.0
O C:VAL26 5.0 48.6 1.0
C C:VAL26 5.0 47.0 1.0

Chlorine binding site 8 out of 57 in 5le5

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Chlorine binding site 8 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:63.9
occ:1.00
 O C:HOH432 2.9 48.8 1.0
NH2 C:ARG117 3.1 52.7 1.0
NH2 C:ARG86 3.2 48.4 1.0
NE C:ARG117 3.5 49.2 1.0
O C:HOH449 3.6 62.0 1.0
CZ C:ARG117 3.8 49.7 1.0
CD1 C:LEU114 3.8 36.6 1.0
NH1 C:ARG86 3.9 48.3 1.0
CZ C:ARG86 4.0 47.7 1.0
CE1 C:TYR118 4.3 36.9 1.0
NH1 C:ARG124 4.6 52.7 1.0
CD C:ARG117 4.7 47.3 1.0
OH C:TYR118 5.0 39.7 1.0

Chlorine binding site 9 out of 57 in 5le5

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Chlorine binding site 9 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:61.2
occ:1.00
 N D:GLY171 3.2 46.5 1.0
O D:HOH449 3.2 65.0 1.0
O D:HOH412 3.2 46.0 1.0
OG D:SER174 3.3 55.9 1.0
CA D:ILE170 3.7 47.4 1.0
CG2 D:ILE31 3.7 47.1 1.0
C D:ILE170 3.9 47.5 1.0
O D:GLY171 3.9 49.1 1.0
CB D:ILE170 4.0 46.3 1.0
NZ D:LYS32 4.0 59.6 1.0
CB D:SER174 4.0 55.4 1.0
CE D:LYS32 4.1 59.0 1.0
CA D:GLY171 4.1 47.2 1.0
CG2 D:ILE170 4.3 46.2 1.0
C D:GLY171 4.5 49.0 1.0
CB D:ILE31 4.5 46.8 1.0
O D:ALA169 4.7 49.1 1.0
N D:ILE170 4.9 48.3 1.0
CD D:LYS32 5.0 58.1 1.0

Chlorine binding site 10 out of 57 in 5le5

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Chlorine binding site 10 out of 57 in the Native Human 20S Proteasome at 1.8 Angstrom


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Native Human 20S Proteasome at 1.8 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:53.5
occ:1.00
 O D:HOH432 3.0 35.5 1.0
OG1 D:THR161 3.2 45.2 1.0
N E:THR78 3.4 39.0 1.0
CA E:LEU77 3.7 37.1 1.0
OG1 E:THR78 3.7 48.1 1.0
CD2 E:LEU77 4.0 42.4 1.0
C E:LEU77 4.0 37.1 1.0
OG D:SER159 4.0 41.2 1.0
CG2 E:THR78 4.1 45.7 1.0
CB D:SER159 4.1 41.9 1.0
O E:GLY76 4.3 35.0 1.0
CB E:THR78 4.3 44.3 1.0
CB E:LEU77 4.3 37.5 1.0
CA E:THR78 4.4 41.3 1.0
CB D:THR161 4.7 45.4 1.0
N E:LEU77 4.7 35.2 1.0
CG E:LEU77 4.8 38.7 1.0
O D:SER159 4.9 42.8 1.0
C E:GLY76 4.9 35.1 1.0
O D:HOH423 4.9 56.2 1.0

Reference:

J.Schrader, F.Henneberg, R.A.Mata, K.Tittmann, T.R.Schneider, H.Stark, G.Bourenkov, A.Chari. The Inhibition Mechanism of Human 20S Proteasomes Enables Next-Generation Inhibitor Design. Science V. 353 594 2016.
ISSN: ESSN 1095-9203
PubMed: 27493187
DOI: 10.1126/SCIENCE.AAF8993
Page generated: Fri Jul 26 11:21:00 2024

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