Chlorine in PDB 5lf2: Crystal Structure of Laminin BETA2 LE5-Lf-LE6

The structure of Crystal Structure of Laminin BETA2 LE5-Lf-LE6, PDB code: 5lf2 was solved by D.Pulido, E.Hohenester, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.88 / 1.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	144.320, 55.350, 111.340, 90.00, 119.38, 90.00
R / Rfree (%)	17.8 / 21

The structure of Crystal Structure of Laminin BETA2 LE5-Lf-LE6 also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Chlorine atom in the Crystal Structure of Laminin BETA2 LE5-Lf-LE6 (pdb code 5lf2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Laminin BETA2 LE5-Lf-LE6, PDB code: 5lf2:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Laminin BETA2 LE5-Lf-LE6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Laminin BETA2 LE5-Lf-LE6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1002 b:58.2 occ:1.00 HE A:ARG814 2.2 37.7 1.0 NE A:ARG814 3.0 31.4 1.0 HE2 A:HIS569 3.1 40.0 1.0 HH21 A:ARG814 3.3 35.7 1.0 HB3 A:ARG814 3.5 36.3 1.0 HD3 A:ARG814 3.6 38.9 1.0 NE2 A:HIS569 3.7 33.3 1.0 O A:HOH1247 3.7 50.9 1.0 CD A:ARG814 3.9 32.4 1.0 CZ A:ARG814 3.9 30.6 1.0 NH2 A:ARG814 3.9 29.8 1.0 HD2 A:ARG815 3.9 44.9 1.0 HG3 A:ARG815 3.9 39.9 1.0 O A:HOH1182 4.0 51.9 1.0 HD2 A:HIS569 4.2 35.4 1.0 HD3 A:ARG815 4.3 44.9 1.0 CB A:ARG814 4.3 30.2 1.0 CD2 A:HIS569 4.3 29.5 1.0 HB2 A:ARG814 4.4 36.3 1.0 CD A:ARG815 4.5 37.4 1.0 O A:HOH1228 4.5 33.2 1.0 HD2 A:ARG814 4.6 38.9 1.0 CE1 A:HIS569 4.7 30.9 1.0 CG A:ARG814 4.7 32.0 1.0 CG A:ARG815 4.7 33.3 1.0 HH22 A:ARG814 4.7 35.7 1.0 HE1 A:HIS569 4.9 37.1 1.0 HH11 A:ARG815 5.0 71.5 1.0 HZ A:PHE563 5.0 36.3 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Laminin BETA2 LE5-Lf-LE6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Laminin BETA2 LE5-Lf-LE6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl902 b:61.0 occ:1.00 HE B:ARG814 2.1 38.0 1.0 NE B:ARG814 2.9 31.6 1.0 HE2 B:HIS569 3.1 39.9 1.0 HH21 B:ARG814 3.3 38.0 1.0 HD3 B:ARG814 3.4 38.9 1.0 HB3 B:ARG814 3.5 38.4 1.0 NE2 B:HIS569 3.7 33.2 1.0 CD B:ARG814 3.7 32.4 1.0 CZ B:ARG814 3.8 31.7 1.0 NH2 B:ARG814 3.9 31.7 1.0 HG3 B:ARG815 4.0 41.4 1.0 HD2 B:ARG815 4.0 45.4 1.0 HD2 B:HIS569 4.0 37.2 1.0 CD2 B:HIS569 4.2 31.0 1.0 CB B:ARG814 4.2 32.0 1.0 HB2 B:ARG814 4.3 38.4 1.0 HD2 B:ARG814 4.5 38.9 1.0 HD3 B:ARG815 4.5 45.4 1.0 CG B:ARG814 4.5 32.4 1.0 CD B:ARG815 4.6 37.8 1.0 HH22 B:ARG814 4.7 38.0 1.0 CE1 B:HIS569 4.7 31.5 1.0 CG B:ARG815 4.7 34.5 1.0 O B:HOH1090 4.8 37.5 1.0 HZ B:PHE563 4.8 34.3 1.0 HE1 B:HIS569 5.0 37.8 1.0 HG2 B:ARG814 5.0 38.9 1.0

D.Pulido, D.C.Briggs, J.Hua, E.Hohenester. Crystallographic Analysis of the Laminin Beta 2 Short Arm Reveals How the Lf Domain Is Inserted Into A Regular Array of Le Domains. Matrix Biol. V.7-58 204 2017.
ISSN: ISSN 1569-1802
PubMed: 27425256
DOI: 10.1016/J.MATBIO.2016.06.006