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Chlorine in PDB 5lp6: Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex

Protein crystallography data

The structure of Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex, PDB code: 5lp6 was solved by J.Marangon, M.Christodoulou, F.Casagrande, G.Tiana, L.Dalla Via, A.Aliverti, D.Passarella, G.Cappelletti, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.85 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 103.619, 155.285, 180.445, 90.00, 90.00, 90.00
R / Rfree (%) 27.3 / 30.5

Other elements in 5lp6:

The structure of Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex (pdb code 5lp6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex, PDB code: 5lp6:

Chlorine binding site 1 out of 1 in 5lp6

Go back to Chlorine Binding Sites List in 5lp6
Chlorine binding site 1 out of 1 in the Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Tubulin-Stathmin-Ttl-Thiocolchicine Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:98.6
occ:1.00
N A:LYS163 3.5 78.9 1.0
CD A:LYS164 3.6 78.4 1.0
N A:GLY162 3.7 77.1 1.0
CB A:LYS163 3.9 79.7 1.0
CE A:LYS164 3.9 78.5 1.0
C A:TYR161 4.0 76.7 1.0
CA A:TYR161 4.2 76.3 1.0
CG A:LYS163 4.2 80.1 1.0
CA A:LYS163 4.2 79.4 1.0
CA A:GLY162 4.4 77.7 1.0
N A:LYS164 4.5 78.5 1.0
C A:GLY162 4.5 78.2 1.0
O A:TYR161 4.7 77.1 1.0
NZ A:LYS164 4.8 78.7 1.0
C A:LYS163 4.8 79.0 1.0
CB A:TYR161 5.0 76.1 1.0

Reference:

J.Marangon, M.S.Christodoulou, F.V.Casagrande, G.Tiana, L.Dalla Via, A.Aliverti, D.Passarella, G.Cappelletti, S.Ricagno. Tools For the Rational Design of Bivalent Microtubule-Targeting Drugs. Biochem. Biophys. Res. V. 479 48 2016COMMUN..
ISSN: ESSN 1090-2104
PubMed: 27613098
DOI: 10.1016/J.BBRC.2016.09.022
Page generated: Sat Dec 12 12:03:45 2020

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