Atomistry » Chlorine » PDB 5lui-5lz9 » 5lwo
Atomistry »
  Chlorine »
    PDB 5lui-5lz9 »
      5lwo »

Chlorine in PDB 5lwo: Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K

Enzymatic activity of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K

All present enzymatic activity of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K:
3.2.1.17;

Protein crystallography data

The structure of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K, PDB code: 5lwo was solved by B.Loll, P.Consentius, U.Gohlke, R.Mueller, M.Kaupp, U.Heinemann, M.C.Wahl, T.Risse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.30 / 1.18
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.170, 60.170, 97.720, 90.00, 90.00, 120.00
R / Rfree (%) 14.1 / 16.4

Other elements in 5lwo:

The structure of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K also contains other interesting chemical elements:

Potassium (K) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K (pdb code 5lwo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K, PDB code: 5lwo:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5lwo

Go back to Chlorine Binding Sites List in 5lwo
Chlorine binding site 1 out of 4 in the Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:13.2
occ:0.71
 HE1 A:HIS31 3.0 13.1 1.0
O A:HOH416 3.2 13.8 1.0
O A:HOH515 3.2 18.7 1.0
O A:HOH432 3.3 11.2 1.0
O A:HOH333 3.5 28.5 1.0
HB1 A:ALA49 3.5 13.8 1.0
HE2 A:HIS31 3.7 14.2 1.0
HB2 A:ALA49 3.7 13.8 1.0
CE1 A:HIS31 3.7 10.9 1.0
HD22 A:LEU66 3.9 15.2 1.0
HA A:ALA49 4.0 12.7 1.0
NE2 A:HIS31 4.0 11.8 1.0
CB A:ALA49 4.0 11.5 1.0
O A:HOH380 4.5 18.3 1.0
CA A:ALA49 4.6 10.6 1.0
OE1 A:GLN69 4.7 12.1 1.0
O A:HOH461 4.7 16.4 0.5
CD2 A:LEU66 4.7 12.6 1.0
O A:HOH568 4.8 22.0 1.0
ND1 A:HIS31 4.8 9.8 1.0
HB3 A:ALA49 4.9 13.8 1.0
HD21 A:LEU66 4.9 15.2 1.0

Chlorine binding site 2 out of 4 in 5lwo

Go back to Chlorine Binding Sites List in 5lwo
Chlorine binding site 2 out of 4 in the Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:12.4
occ:1.00
 H A:ARG145 2.4 10.0 1.0
H A:ASN144 2.8 10.2 1.0
HB2 A:ASN144 2.9 13.3 1.0
HB A:THR142 3.0 10.3 1.0
HA A:THR142 3.0 9.8 1.0
O A:HOH563 3.1 14.5 1.0
O A:HOH477 3.2 26.4 1.0
N A:ARG145 3.3 8.3 1.0
N A:ASN144 3.4 8.5 1.0
C A:THR142 3.4 7.8 1.0
CA A:THR142 3.5 8.2 1.0
HB2 A:ARG145 3.6 11.8 1.0
HB3 A:ARG145 3.6 11.8 1.0
CB A:THR142 3.6 8.6 1.0
HD2 A:PRO143 3.7 11.1 1.0
HG22 A:THR142 3.7 11.9 1.0
CB A:ASN144 3.8 11.1 1.0
N A:PRO143 3.8 8.2 1.0
O A:THR142 3.8 8.4 1.0
CA A:ASN144 3.9 9.4 1.0
CB A:ARG145 3.9 9.8 1.0
C A:ASN144 4.0 8.9 1.0
CG2 A:THR142 4.2 9.9 1.0
CA A:ARG145 4.2 8.5 1.0
CD A:PRO143 4.2 9.2 1.0
C A:PRO143 4.3 8.4 1.0
HB3 A:ASN144 4.3 13.3 1.0
HG2 A:PRO143 4.5 11.6 1.0
H A:ALA146 4.6 10.2 1.0
HD22 A:ASN144 4.6 21.5 1.0
CA A:PRO143 4.6 8.3 1.0
HG21 A:THR142 4.6 11.9 1.0
O A:HOH365 4.7 14.6 1.0
CG A:ASN144 4.7 15.7 1.0
HA A:ARG145 4.8 10.2 1.0
HA A:ASN144 4.8 11.2 1.0
OG1 A:THR142 4.9 9.3 1.0
HH22 A:ARG148 4.9 12.1 1.0
N A:THR142 4.9 8.5 1.0
HG1 A:THR142 4.9 11.1 1.0
CG A:PRO143 4.9 9.7 1.0
ND2 A:ASN144 5.0 17.9 1.0
HG23 A:THR142 5.0 11.9 1.0

Chlorine binding site 3 out of 4 in 5lwo

Go back to Chlorine Binding Sites List in 5lwo
Chlorine binding site 3 out of 4 in the Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:17.8
occ:0.78
 HZ2 A:LYS135 2.2 25.8 1.0
HD22 A:ASN132 2.3 14.5 1.0
O A:HOH387 3.0 14.5 1.0
NZ A:LYS135 3.1 21.5 1.0
HB2 A:ASN132 3.1 13.0 1.0
O A:HOH538 3.1 31.2 1.0
ND2 A:ASN132 3.1 12.1 1.0
HG12 A:VAL131 3.2 15.4 1.0
HD2 A:LYS135 3.2 18.8 1.0
HA A:ASN132 3.2 12.2 1.0
HZ3 A:LYS135 3.5 25.8 1.0
HE1 A:MET120 3.5 18.6 1.0
HZ1 A:LYS135 3.5 25.8 1.0
HD21 A:ASN132 3.7 14.5 1.0
CB A:ASN132 3.7 10.8 1.0
HE3 A:LYS135 3.7 22.6 1.0
CE A:LYS135 3.8 18.8 1.0
CA A:ASN132 3.8 10.2 1.0
CG A:ASN132 3.9 11.4 1.0
CD A:LYS135 3.9 15.7 1.0
CG1 A:VAL131 4.1 12.8 1.0
HG11 A:VAL131 4.1 15.4 1.0
N A:ASN132 4.1 10.3 1.0
H A:ASN132 4.3 12.3 1.0
HD3 A:LYS135 4.4 18.8 1.0
CE A:MET120 4.4 15.5 1.0
O A:HOH433 4.6 24.8 1.0
HB A:VAL131 4.6 13.8 1.0
C A:VAL131 4.6 10.4 1.0
HB3 A:ASN132 4.6 13.0 1.0
O A:HOH443 4.7 31.9 1.0
HE2 A:LYS135 4.7 22.6 1.0
HG13 A:VAL131 4.7 15.4 1.0
HE3 A:MET120 4.8 18.6 1.0
O A:GLU128 4.9 10.5 1.0
O A:VAL131 4.9 11.2 1.0
HE2 A:MET120 4.9 18.6 1.0
CB A:VAL131 4.9 11.5 1.0
O A:HOH566 4.9 40.9 1.0
O A:HOH561 4.9 18.1 1.0

Chlorine binding site 4 out of 4 in 5lwo

Go back to Chlorine Binding Sites List in 5lwo
Chlorine binding site 4 out of 4 in the Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Spin-Labelled T4 Lysozyme Mutant L115C-R119C-R1 at 100K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:46.8
occ:1.00
 O A:ILE58 2.7 14.2 1.0
O A:HOH555 2.7 33.1 1.0
O A:HOH553 2.8 26.9 1.0
HG22 A:VAL57 2.8 21.3 0.4
O A:HOH565 2.8 32.2 1.0
HG12 A:VAL57 3.0 22.3 0.6
HD13 A:LEU15 3.1 19.5 1.0
HG13 A:VAL57 3.2 22.3 0.6
HB3 A:LEU15 3.3 16.8 1.0
HA A:THR59 3.4 16.5 1.0
CG1 A:VAL57 3.4 18.6 0.6
HG21 A:VAL57 3.5 21.3 0.4
HG11 A:VAL57 3.5 22.3 0.6
CG2 A:VAL57 3.5 17.7 0.4
HD12 A:LEU15 3.6 19.5 1.0
C A:ILE58 3.6 13.1 1.0
HG23 A:VAL57 3.8 21.3 0.4
CD1 A:LEU15 3.8 16.2 1.0
HB2 A:LEU15 4.0 16.8 1.0
CB A:LEU15 4.0 14.0 1.0
HG22 A:THR59 4.2 20.1 1.0
CA A:THR59 4.2 13.7 1.0
N A:THR59 4.3 13.2 1.0
H A:ILE58 4.3 16.3 1.0
O A:HOH488 4.4 33.7 1.0
N A:ILE58 4.5 13.6 1.0
CG A:LEU15 4.5 14.7 1.0
HD11 A:LEU15 4.5 19.5 1.0
CA A:ILE58 4.7 12.7 1.0
HG13 A:VAL57 4.7 21.8 0.4
O A:HOH444 4.8 19.9 1.0
HD22 A:LEU15 4.8 18.1 1.0
CB A:VAL57 4.8 17.4 0.4
CG2 A:THR59 4.9 16.7 1.0
CB A:VAL57 4.9 17.8 0.6
O A:LEU15 4.9 14.9 1.0
HG23 A:THR59 4.9 20.1 1.0
HA A:ILE58 5.0 15.2 1.0

Reference:

P.Consentius, B.Loll, U.Gohlke, C.Alings, C.Muller, R.Muller, C.Teutloff, U.Heinemann, M.Kaupp, M.C.Wahl, T.Risse. Internal Dynamics of the 3-Pyrroline-N-Oxide Ring in Spin-Labeled Proteins. J Phys Chem Lett V. 8 1113 2017.
ISSN: ESSN 1948-7185
PubMed: 28221042
DOI: 10.1021/ACS.JPCLETT.6B02971
Page generated: Fri Jul 26 12:17:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy