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Chlorine in PDB 5mdu: Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe.

Protein crystallography data

The structure of Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe., PDB code: 5mdu was solved by S.Wittmann, M.Renner, K.El Omari, O.Adams, L.Vasiljeva, J.Grimes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.34 / 1.02
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.130, 47.170, 32.360, 90.00, 98.88, 90.00
R / Rfree (%) 13.5 / 15.2

Other elements in 5mdu:

The structure of Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe. also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe. (pdb code 5mdu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe., PDB code: 5mdu:

Chlorine binding site 1 out of 1 in 5mdu

Go back to Chlorine Binding Sites List in 5mdu
Chlorine binding site 1 out of 1 in the Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Rna Recognition Motif (Rrm) of SEB1 From S. Pombe. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:33.7
occ:1.00
O A:HOH787 2.9 12.4 1.0
N A:SER431 3.1 13.4 1.0
CD A:ARG450 3.4 20.9 1.0
O A:HOH840 3.4 30.6 1.0
CA A:GLY430 3.6 14.5 1.0
CG A:ARG450 3.8 16.7 1.0
C A:GLY430 3.8 13.7 1.0
CB A:SER431 4.0 15.9 1.0
CA A:SER431 4.1 13.7 1.0
OG A:SER431 4.2 22.7 1.0
O A:HOH862 4.2 35.8 1.0
CB A:ARG450 4.3 12.9 1.0
CB A:ALA453 4.5 12.7 1.0
NE A:ARG450 4.5 23.1 0.7
O A:SER431 4.6 11.9 1.0
C A:SER431 4.9 12.2 1.0
N A:GLY430 4.9 14.9 1.0
N A:ARG450 5.0 10.8 1.0

Reference:

S.Wittmann, M.Renner, B.R.Watts, O.Adams, M.Huseyin, C.Baejen, K.El Omari, C.Kilchert, D.H.Heo, T.Kecman, P.Cramer, J.M.Grimes, L.Vasiljeva. The Conserved Protein SEB1 Drives Transcription Termination By Binding Rna Polymerase II and Nascent Rna. Nat Commun V. 8 14861 2017.
ISSN: ESSN 2041-1723
PubMed: 28367989
DOI: 10.1038/NCOMMS14861
Page generated: Sat Dec 12 12:05:49 2020

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