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Chlorine in PDB 5mhk: ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter

Protein crystallography data

The structure of ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter, PDB code: 5mhk was solved by R.B.Tunnicliffe, M.P.Lockhart-Cairns, C.Levy, P.Mould, T.A.Jowitt, H.Sito, C.Baldock, R.M.Sandri-Goldin, A.P.Golovanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.30 / 2.28
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.510, 100.730, 201.890, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.3

Other elements in 5mhk:

The structure of ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter (pdb code 5mhk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter, PDB code: 5mhk:

Chlorine binding site 1 out of 1 in 5mhk

Go back to Chlorine Binding Sites List in 5mhk
Chlorine binding site 1 out of 1 in the ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of ICP4 Dna-Binding Domain in Complex with 19MER Dna Duplex From Its Own Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:56.2
occ:1.00
N C:SER312 3.5 37.4 1.0
NH1 D:ARG472 3.9 32.4 1.0
CB C:SER312 4.0 33.5 1.0
NH2 D:ARG472 4.0 38.2 1.0
CA C:VAL311 4.2 37.7 1.0
O C:HOH640 4.2 47.1 1.0
O C:TYR310 4.3 45.1 1.0
C C:VAL311 4.3 39.0 1.0
CZ D:ARG472 4.4 38.0 1.0
CA C:SER312 4.4 41.5 1.0
CG1 C:VAL311 4.6 35.5 1.0
CB C:VAL311 4.9 42.7 1.0

Reference:

R.B.Tunnicliffe, M.P.Lockhart-Cairns, C.Levy, A.P.Mould, T.A.Jowitt, H.Sito, C.Baldock, R.M.Sandri-Goldin, A.P.Golovanov. The Herpes Viral Transcription Factor ICP4 Forms A Novel Dna Recognition Complex. Nucleic Acids Res. V. 45 8064 2017.
ISSN: ESSN 1362-4962
PubMed: 28505309
DOI: 10.1093/NAR/GKX419
Page generated: Sat Dec 12 12:06:18 2020

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