Atomistry » Chlorine » PDB 5mlx-5mtr » 5mr3
Atomistry »
  Chlorine »
    PDB 5mlx-5mtr »
      5mr3 »

Chlorine in PDB 5mr3: Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution

Protein crystallography data

The structure of Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution, PDB code: 5mr3 was solved by K.Nishimura, I.Raj, H.Sadat Al-Hosseini, D.De Sanctis, L.Jovine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.32 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 75.870, 87.860, 92.550, 90.00, 100.93, 90.00
R / Rfree (%) 20.1 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution (pdb code 5mr3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution, PDB code: 5mr3:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5mr3

Go back to Chlorine Binding Sites List in 5mr3
Chlorine binding site 1 out of 2 in the Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl903

b:33.1
occ:0.85
H F:LEU236 2.2 34.5 1.0
H B:GLY247 2.6 38.3 1.0
HH B:TYR249 2.7 35.3 1.0
OH B:TYR249 2.8 29.4 1.0
HE3 B:TRP246 2.9 34.6 1.0
HB3 F:LYS235 3.0 33.4 1.0
N F:LEU236 3.1 28.7 1.0
HA F:LYS235 3.1 32.6 1.0
HB3 B:TRP246 3.1 33.9 1.0
HE2 F:LYS235 3.1 52.3 1.0
HB2 F:LEU236 3.2 37.3 1.0
N B:GLY247 3.3 31.9 1.0
O F:HOH548 3.3 29.4 1.0
CZ B:TYR249 3.4 29.3 1.0
HA2 B:GLY247 3.6 36.4 1.0
HE3 F:LYS235 3.6 52.3 1.0
HB3 F:LEU236 3.6 37.3 1.0
CA F:LYS235 3.7 27.1 1.0
HE1 B:TYR249 3.7 38.0 1.0
CB F:LYS235 3.7 27.9 1.0
HG2 F:LYS235 3.7 37.2 1.0
CE3 B:TRP246 3.7 28.8 1.0
CB F:LEU236 3.8 31.1 1.0
CE1 B:TYR249 3.8 31.7 1.0
CE F:LYS235 3.8 43.6 1.0
C F:LYS235 3.9 27.8 1.0
O B:HOH1029 3.9 29.4 0.9
CA B:GLY247 3.9 30.4 1.0
CA F:LEU236 4.0 31.5 1.0
CB B:TRP246 4.0 28.3 1.0
HA B:TRP246 4.1 31.8 1.0
CG F:LYS235 4.1 31.0 1.0
CE2 B:TYR249 4.2 28.3 1.0
C B:TRP246 4.2 24.8 1.0
CA B:TRP246 4.4 26.5 1.0
HE2 B:TYR249 4.4 33.9 1.0
O B:GLY247 4.4 27.9 1.0
C B:GLY247 4.5 28.0 1.0
H F:LEU237 4.5 35.9 1.0
CD2 B:TRP246 4.5 29.5 1.0
HB2 F:LYS235 4.5 33.4 1.0
HZ3 B:TRP246 4.5 34.1 1.0
CD F:LYS235 4.6 34.6 1.0
HA F:LEU236 4.6 37.8 1.0
CZ3 B:TRP246 4.6 28.4 1.0
HB2 B:TRP246 4.7 33.9 1.0
CG B:TRP246 4.7 29.3 1.0
HA3 B:GLY247 4.8 36.4 1.0
CD1 B:TYR249 4.8 33.1 1.0
HZ1 F:LYS235 4.8 60.5 1.0
NZ F:LYS235 4.9 50.5 1.0
O F:ASN234 5.0 27.3 1.0

Chlorine binding site 2 out of 2 in 5mr3

Go back to Chlorine Binding Sites List in 5mr3
Chlorine binding site 2 out of 2 in the Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Red Abalone Egg Verl Repeat 2 with Linker in Complex with Sperm Lysin at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl401

b:36.9
occ:0.90
H B:LEU236 2.2 35.0 1.0
H F:GLY247 2.6 34.4 1.0
HH F:TYR249 2.7 40.8 1.0
HZ2 B:LYS235 2.8 60.2 1.0
HB3 B:LYS235 2.9 34.2 1.0
HE3 F:TRP246 2.9 39.0 1.0
OH F:TYR249 2.9 34.0 1.0
HA B:LYS235 3.0 33.6 1.0
N B:LEU236 3.0 29.2 1.0
HB3 F:TRP246 3.2 33.6 1.0
N F:GLY247 3.3 28.6 1.0
HB2 B:LEU236 3.3 47.2 1.0
O B:HOH1055 3.4 29.4 1.0
CZ F:TYR249 3.4 33.9 1.0
HG2 B:LYS235 3.5 41.3 1.0
HE1 F:TYR249 3.5 42.2 1.0
NZ B:LYS235 3.5 50.2 1.0
HA2 F:GLY247 3.5 34.0 1.0
HZ1 B:LYS235 3.5 60.2 1.0
CB B:LYS235 3.5 28.5 1.0
CA B:LYS235 3.6 28.0 1.0
HE3 B:LYS235 3.6 54.8 1.0
CE1 F:TYR249 3.6 35.1 1.0
HB3 B:LEU236 3.7 47.2 1.0
CE3 F:TRP246 3.7 32.5 1.0
C B:LYS235 3.8 28.3 1.0
CB B:LEU236 3.8 39.3 1.0
O F:HOH511 3.8 29.5 0.9
CA F:GLY247 3.9 28.3 1.0
CG B:LYS235 4.0 34.5 1.0
CA B:LEU236 4.0 29.7 1.0
CE B:LYS235 4.1 45.7 1.0
CB F:TRP246 4.1 28.0 1.0
HA F:TRP246 4.1 34.8 1.0
HZ3 B:LYS235 4.2 60.2 1.0
O F:GLY247 4.2 32.7 1.0
C F:TRP246 4.3 29.3 1.0
CE2 F:TYR249 4.3 30.4 1.0
HB2 B:LYS235 4.4 34.2 1.0
CA F:TRP246 4.4 29.0 1.0
C F:GLY247 4.4 29.9 1.0
HZ3 F:TRP246 4.5 41.7 1.0
H B:LEU237 4.5 36.0 1.0
CD2 F:TRP246 4.5 29.2 1.0
HE2 F:TYR249 4.5 36.4 1.0
HA B:LEU236 4.6 35.6 1.0
CZ3 F:TRP246 4.6 34.8 1.0
CD B:LYS235 4.7 38.4 1.0
CD1 F:TYR249 4.7 32.2 1.0
HB2 F:TRP246 4.7 33.6 1.0
CG F:TRP246 4.7 28.6 1.0
HA3 F:GLY247 4.7 34.0 1.0
HG3 B:LYS235 4.8 41.3 1.0
HE2 B:LYS235 4.9 54.8 1.0
N B:LYS235 4.9 27.1 1.0
O B:ASN234 4.9 27.2 1.0

Reference:

I.Raj, H.Sadat Al Hosseini, E.Dioguardi, K.Nishimura, L.Han, A.Villa, D.De Sanctis, L.Jovine. Structural Basis of Egg Coat-Sperm Recognition at Fertilization. Cell V. 169 1315 2017.
ISSN: ISSN 1097-4172
PubMed: 28622512
DOI: 10.1016/J.CELL.2017.05.033
Page generated: Fri Jul 26 12:51:43 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy