Chlorine in PDB 5mtt: Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose
Protein crystallography data
The structure of Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose, PDB code: 5mtt
was solved by
C.Homburg,
M.Bommer,
S.Wuttge,
C.Hobe,
S.Beck,
H.Dobbek,
J.Deutscher,
A.Licht,
E.Schneider,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.54 /
1.12
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.494,
83.079,
85.036,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
12 /
13.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose
(pdb code 5mtt). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose, PDB code: 5mtt:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 5mtt
Go back to
Chlorine Binding Sites List in 5mtt
Chlorine binding site 1 out
of 3 in the Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl420
b:13.8
occ:0.68
|
HD22
|
A:ASN283
|
2.4
|
18.1
|
1.0
|
H
|
A:SER280
|
2.6
|
17.6
|
1.0
|
HB2
|
A:ASN283
|
2.9
|
15.7
|
1.0
|
HA
|
A:ALA279
|
2.9
|
17.6
|
1.0
|
O
|
A:HOH540
|
3.0
|
26.3
|
1.0
|
ND2
|
A:ASN283
|
3.3
|
15.1
|
1.0
|
HG
|
A:SER280
|
3.3
|
28.6
|
1.0
|
N
|
A:SER280
|
3.4
|
14.7
|
1.0
|
HB3
|
A:ASN283
|
3.5
|
15.7
|
1.0
|
CB
|
A:ASN283
|
3.5
|
13.1
|
1.0
|
CA
|
A:ALA279
|
3.8
|
14.7
|
1.0
|
HD21
|
A:ASN283
|
3.9
|
18.1
|
1.0
|
O
|
A:SER280
|
3.9
|
14.3
|
1.0
|
CG
|
A:ASN283
|
3.9
|
13.0
|
1.0
|
HB1
|
A:ALA279
|
3.9
|
19.9
|
1.0
|
OG
|
A:SER280
|
4.1
|
23.8
|
1.0
|
C
|
A:ALA279
|
4.1
|
14.1
|
1.0
|
CB
|
A:ALA279
|
4.3
|
16.5
|
1.0
|
CA
|
A:SER280
|
4.4
|
16.6
|
1.0
|
HE1
|
A:HIS278
|
4.5
|
37.5
|
0.4
|
HB2
|
A:ALA279
|
4.5
|
19.9
|
1.0
|
C
|
A:SER280
|
4.5
|
15.0
|
1.0
|
O
|
A:HIS278
|
4.6
|
15.9
|
0.6
|
O
|
A:HIS278
|
4.7
|
15.8
|
0.4
|
O
|
A:HOH693
|
4.8
|
18.4
|
1.0
|
CB
|
A:SER280
|
4.8
|
21.5
|
1.0
|
H
|
A:ASN283
|
4.8
|
16.6
|
1.0
|
CE1
|
A:HIS278
|
4.9
|
31.2
|
0.4
|
CA
|
A:ASN283
|
4.9
|
12.6
|
1.0
|
N
|
A:ALA279
|
4.9
|
14.2
|
1.0
|
ND1
|
A:HIS278
|
4.9
|
30.6
|
0.4
|
H
|
A:GLN284
|
4.9
|
15.7
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 5mtt
Go back to
Chlorine Binding Sites List in 5mtt
Chlorine binding site 2 out
of 3 in the Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl421
b:37.1
occ:0.72
|
H
|
A:ALA108
|
2.3
|
15.8
|
1.0
|
HA
|
A:VAL107
|
2.9
|
16.6
|
1.0
|
O
|
A:HOH939
|
3.0
|
33.3
|
1.0
|
N
|
A:ALA108
|
3.1
|
13.1
|
1.0
|
HB
|
A:VAL107
|
3.3
|
17.1
|
1.0
|
HB2
|
A:ALA108
|
3.4
|
20.0
|
1.0
|
HG12
|
A:VAL107
|
3.5
|
20.9
|
1.0
|
CA
|
A:VAL107
|
3.6
|
13.9
|
1.0
|
HB3
|
A:ALA108
|
3.7
|
20.0
|
1.0
|
CB
|
A:VAL107
|
3.8
|
14.3
|
1.0
|
HE2
|
A:LYS314
|
3.8
|
40.8
|
1.0
|
C
|
A:VAL107
|
3.9
|
12.7
|
1.0
|
CB
|
A:ALA108
|
3.9
|
16.7
|
1.0
|
O
|
A:HOH769
|
4.0
|
17.9
|
1.0
|
CA
|
A:ALA108
|
4.1
|
14.4
|
1.0
|
CG1
|
A:VAL107
|
4.1
|
17.4
|
1.0
|
HG2
|
A:LYS314
|
4.3
|
27.7
|
1.0
|
HA
|
A:ALA108
|
4.6
|
17.3
|
1.0
|
HG11
|
A:VAL107
|
4.6
|
20.9
|
1.0
|
CE
|
A:LYS314
|
4.8
|
34.0
|
1.0
|
HG13
|
A:VAL107
|
4.8
|
20.9
|
1.0
|
HB1
|
A:ALA108
|
4.8
|
20.0
|
1.0
|
N
|
A:VAL107
|
4.9
|
13.2
|
1.0
|
H
|
A:VAL109
|
4.9
|
15.5
|
1.0
|
O
|
A:ASN106
|
5.0
|
14.8
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 5mtt
Go back to
Chlorine Binding Sites List in 5mtt
Chlorine binding site 3 out
of 3 in the Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Maltodextrin Binding Protein MALE1 From L. Casei BL23 Bound to Maltotetraose within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl422
b:17.8
occ:0.63
|
H
|
A:LYS256
|
2.2
|
15.7
|
0.6
|
H
|
A:LYS256
|
2.3
|
16.2
|
0.4
|
HE1
|
A:TRP201
|
2.4
|
15.3
|
1.0
|
O
|
A:HOH532
|
2.9
|
26.6
|
1.0
|
O
|
A:HOH731
|
3.0
|
13.0
|
1.0
|
HA
|
A:ILE255
|
3.0
|
13.6
|
1.0
|
N
|
A:LYS256
|
3.1
|
13.1
|
0.6
|
N
|
A:LYS256
|
3.1
|
13.5
|
0.4
|
HB3
|
A:TRP147
|
3.1
|
15.2
|
1.0
|
HB2
|
A:LYS256
|
3.2
|
22.3
|
0.4
|
NE1
|
A:TRP201
|
3.2
|
12.8
|
1.0
|
HB2
|
A:LYS256
|
3.2
|
23.5
|
0.6
|
O
|
A:HOH773
|
3.2
|
37.9
|
1.0
|
OD1
|
A:ASP148
|
3.3
|
25.6
|
1.0
|
HB
|
A:ILE255
|
3.3
|
13.7
|
1.0
|
OD2
|
A:ASP148
|
3.4
|
29.2
|
1.0
|
CG
|
A:ASP148
|
3.5
|
23.6
|
1.0
|
HD1
|
A:TRP147
|
3.5
|
15.8
|
1.0
|
HG22
|
A:ILE255
|
3.5
|
13.6
|
1.0
|
HD1
|
A:TRP201
|
3.7
|
14.7
|
1.0
|
O
|
A:HOH506
|
3.7
|
30.2
|
1.0
|
CA
|
A:ILE255
|
3.7
|
11.3
|
1.0
|
HG3
|
A:LYS256
|
3.7
|
29.7
|
0.4
|
CD1
|
A:TRP201
|
3.8
|
12.3
|
1.0
|
CB
|
A:LYS256
|
3.9
|
18.6
|
0.4
|
CB
|
A:ILE255
|
3.9
|
11.4
|
1.0
|
C
|
A:ILE255
|
3.9
|
12.5
|
1.0
|
H
|
A:ASP148
|
3.9
|
16.2
|
1.0
|
CB
|
A:LYS256
|
4.0
|
19.6
|
0.6
|
HG3
|
A:LYS256
|
4.0
|
33.0
|
0.6
|
CA
|
A:LYS256
|
4.0
|
15.1
|
0.4
|
CA
|
A:LYS256
|
4.0
|
14.7
|
0.6
|
CD1
|
A:TRP147
|
4.0
|
13.1
|
1.0
|
CB
|
A:TRP147
|
4.1
|
12.7
|
1.0
|
O
|
A:LYS256
|
4.1
|
17.0
|
0.6
|
HD2
|
A:LYS256
|
4.2
|
35.6
|
0.4
|
CG2
|
A:ILE255
|
4.2
|
11.3
|
1.0
|
O
|
A:LYS256
|
4.2
|
18.2
|
0.4
|
CG
|
A:LYS256
|
4.3
|
24.8
|
0.4
|
HE22
|
A:GLN205
|
4.3
|
16.9
|
1.0
|
CE2
|
A:TRP201
|
4.3
|
11.7
|
1.0
|
CG
|
A:TRP147
|
4.3
|
12.0
|
1.0
|
N
|
A:ASP148
|
4.4
|
13.5
|
1.0
|
HZ2
|
A:TRP201
|
4.5
|
14.9
|
1.0
|
HB2
|
A:TRP147
|
4.5
|
15.2
|
1.0
|
CG
|
A:LYS256
|
4.5
|
27.5
|
0.6
|
C
|
A:LYS256
|
4.5
|
14.8
|
0.6
|
C
|
A:LYS256
|
4.6
|
15.8
|
0.4
|
CB
|
A:ASP148
|
4.6
|
18.0
|
1.0
|
HB2
|
A:ASP148
|
4.6
|
21.6
|
1.0
|
HZ2
|
A:LYS256
|
4.6
|
37.1
|
0.4
|
HG21
|
A:ILE255
|
4.7
|
13.6
|
1.0
|
HZ3
|
A:LYS256
|
4.7
|
37.1
|
0.4
|
HB3
|
A:LYS256
|
4.7
|
22.3
|
0.4
|
CD
|
A:LYS256
|
4.7
|
29.7
|
0.4
|
HB3
|
A:LYS256
|
4.8
|
23.5
|
0.6
|
HD2
|
A:LYS256
|
4.8
|
39.3
|
0.6
|
HA
|
A:LYS256
|
4.8
|
18.1
|
0.4
|
HA
|
A:LYS256
|
4.8
|
17.6
|
0.6
|
CZ2
|
A:TRP201
|
4.9
|
12.4
|
1.0
|
HG23
|
A:ILE255
|
4.9
|
13.6
|
1.0
|
H
|
A:TRP147
|
4.9
|
14.3
|
1.0
|
O
|
A:HOH627
|
4.9
|
17.5
|
1.0
|
CA
|
A:ASP148
|
5.0
|
15.2
|
1.0
|
NE2
|
A:GLN205
|
5.0
|
14.1
|
1.0
|
|
Reference:
C.Homburg,
M.Bommer,
S.Wuttge,
C.Hobe,
S.Beck,
H.Dobbek,
J.Deutscher,
A.Licht,
E.Schneider.
Inducer Exclusion in Firmicutes: Insights Into the Regulation of A Carbohydrate Atp Binding Cassette Transporter From Lactobacillus Casei BL23 By the Signal Transducing Protein P-SER46-Hpr. Mol. Microbiol. V. 105 25 2017.
ISSN: ESSN 1365-2958
PubMed: 28370477
DOI: 10.1111/MMI.13680
Page generated: Fri Jul 26 12:56:21 2024
|