Chlorine in PDB 5mvm: X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
Protein crystallography data
The structure of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol, PDB code: 5mvm
was solved by
Z.Fourati,
M.Delarue,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
3.10
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
181.760,
132.510,
160.520,
90.00,
102.72,
90.00
|
R / Rfree (%)
|
19.5 /
20.8
|
Other elements in 5mvm:
The structure of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
(pdb code 5mvm). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol, PDB code: 5mvm:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 5mvm
Go back to
Chlorine Binding Sites List in 5mvm
Chlorine binding site 1 out
of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl503
b:73.3
occ:1.00
|
O
|
A:HOH627
|
2.9
|
78.9
|
1.0
|
N
|
A:PHE78
|
3.3
|
57.7
|
1.0
|
NH1
|
A:ARG85
|
3.3
|
49.9
|
1.0
|
N
|
A:ARG85
|
3.5
|
74.7
|
1.0
|
CD2
|
A:PHE78
|
3.6
|
61.6
|
1.0
|
CG
|
A:ARG85
|
3.6
|
63.9
|
1.0
|
CB
|
A:PHE78
|
3.8
|
57.9
|
1.0
|
CA
|
A:ALA84
|
3.9
|
77.5
|
1.0
|
CA
|
A:ARG77
|
4.0
|
54.9
|
1.0
|
CG2
|
A:VAL81
|
4.1
|
61.6
|
1.0
|
CB
|
A:ARG85
|
4.1
|
69.2
|
1.0
|
C
|
A:ARG77
|
4.1
|
62.4
|
1.0
|
CA
|
A:PHE78
|
4.1
|
56.2
|
1.0
|
CG
|
A:PHE78
|
4.2
|
59.5
|
1.0
|
C
|
A:ALA84
|
4.2
|
80.3
|
1.0
|
CB
|
A:ALA84
|
4.2
|
78.7
|
1.0
|
O
|
A:PHE78
|
4.3
|
59.3
|
1.0
|
CD
|
A:ARG85
|
4.4
|
54.6
|
1.0
|
CA
|
A:ARG85
|
4.4
|
73.6
|
1.0
|
CZ
|
A:ARG85
|
4.5
|
68.6
|
1.0
|
CB
|
A:ARG77
|
4.5
|
55.5
|
1.0
|
CE2
|
A:PHE78
|
4.6
|
64.0
|
1.0
|
C
|
A:PHE78
|
4.8
|
58.0
|
1.0
|
CG
|
A:ARG77
|
4.8
|
65.7
|
1.0
|
NE
|
A:ARG85
|
4.9
|
59.8
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 5mvm
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Chlorine Binding Sites List in 5mvm
Chlorine binding site 2 out
of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl503
b:0.2
occ:1.00
|
O
|
B:HOH627
|
2.9
|
35.7
|
1.0
|
NH1
|
B:ARG85
|
3.6
|
61.4
|
1.0
|
CB
|
B:ALA84
|
3.7
|
86.2
|
1.0
|
CG
|
B:ARG85
|
4.1
|
78.6
|
1.0
|
N
|
B:ARG85
|
4.2
|
81.8
|
1.0
|
CA
|
B:ALA84
|
4.2
|
84.7
|
1.0
|
CZ
|
B:ARG85
|
4.3
|
76.4
|
1.0
|
CG
|
B:ARG77
|
4.4
|
57.8
|
1.0
|
O
|
B:ILE76
|
4.4
|
62.0
|
1.0
|
C
|
B:ALA84
|
4.6
|
88.0
|
1.0
|
CA
|
B:ARG77
|
4.6
|
52.5
|
1.0
|
OD2
|
A:ASP88
|
4.7
|
0.7
|
1.0
|
CB
|
B:ARG77
|
4.8
|
49.1
|
1.0
|
O
|
B:ARG85
|
4.9
|
85.5
|
1.0
|
NE
|
B:ARG85
|
4.9
|
76.4
|
1.0
|
NH2
|
B:ARG85
|
5.0
|
48.0
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 5mvm
Go back to
Chlorine Binding Sites List in 5mvm
Chlorine binding site 3 out
of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl402
b:82.5
occ:1.00
|
N
|
C:PHE78
|
3.2
|
58.6
|
1.0
|
NH1
|
C:ARG85
|
3.4
|
78.3
|
1.0
|
N
|
C:ARG85
|
3.6
|
79.9
|
1.0
|
CD2
|
C:PHE78
|
3.7
|
66.2
|
1.0
|
CG
|
C:ARG85
|
3.7
|
77.8
|
1.0
|
CB
|
C:PHE78
|
3.9
|
60.6
|
1.0
|
CA
|
C:ARG77
|
3.9
|
56.0
|
1.0
|
CA
|
C:ALA84
|
4.0
|
82.3
|
1.0
|
C
|
C:ARG77
|
4.0
|
61.5
|
1.0
|
CA
|
C:PHE78
|
4.1
|
58.7
|
1.0
|
CG2
|
C:VAL81
|
4.1
|
60.5
|
1.0
|
O
|
C:PHE78
|
4.2
|
68.4
|
1.0
|
CG
|
C:PHE78
|
4.3
|
63.1
|
1.0
|
CB
|
C:ARG77
|
4.3
|
54.1
|
1.0
|
CB
|
C:ARG85
|
4.3
|
75.3
|
1.0
|
CB
|
C:ALA84
|
4.3
|
83.9
|
1.0
|
O
|
C:HOH532
|
4.3
|
71.0
|
1.0
|
C
|
C:ALA84
|
4.3
|
83.9
|
1.0
|
CD
|
C:ARG85
|
4.5
|
73.2
|
1.0
|
CZ
|
C:ARG85
|
4.5
|
89.6
|
1.0
|
CA
|
C:ARG85
|
4.6
|
79.1
|
1.0
|
C
|
C:PHE78
|
4.7
|
65.2
|
1.0
|
CG
|
C:ARG77
|
4.7
|
64.7
|
1.0
|
CE2
|
C:PHE78
|
4.8
|
68.3
|
1.0
|
O
|
C:ILE76
|
5.0
|
63.2
|
1.0
|
NE
|
C:ARG85
|
5.0
|
74.9
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 5mvm
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Chlorine Binding Sites List in 5mvm
Chlorine binding site 4 out
of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl403
b:68.3
occ:1.00
|
N
|
D:PHE78
|
3.1
|
52.2
|
1.0
|
NH1
|
D:ARG85
|
3.8
|
71.0
|
1.0
|
CA
|
D:ARG77
|
3.8
|
51.2
|
1.0
|
N
|
D:ARG85
|
3.8
|
73.3
|
1.0
|
CB
|
D:PHE78
|
3.8
|
55.0
|
1.0
|
CG2
|
D:VAL81
|
3.9
|
60.2
|
1.0
|
O
|
D:PHE78
|
3.9
|
57.4
|
1.0
|
CA
|
D:ALA84
|
3.9
|
72.3
|
1.0
|
C
|
D:ARG77
|
3.9
|
57.3
|
1.0
|
CD2
|
D:PHE78
|
3.9
|
60.2
|
1.0
|
CA
|
D:PHE78
|
4.0
|
52.3
|
1.0
|
CB
|
D:ARG77
|
4.1
|
49.8
|
1.0
|
CG
|
D:ARG85
|
4.2
|
69.9
|
1.0
|
CB
|
D:ALA84
|
4.2
|
73.4
|
1.0
|
CG
|
D:ARG77
|
4.3
|
51.9
|
1.0
|
CG
|
D:PHE78
|
4.4
|
58.0
|
1.0
|
C
|
D:ALA84
|
4.4
|
77.2
|
1.0
|
C
|
D:PHE78
|
4.4
|
56.4
|
1.0
|
CB
|
D:ARG85
|
4.6
|
69.2
|
1.0
|
CA
|
D:ARG85
|
4.8
|
73.0
|
1.0
|
CZ
|
D:ARG85
|
5.0
|
83.0
|
1.0
|
CD
|
D:ARG85
|
5.0
|
63.7
|
1.0
|
N
|
D:ALA84
|
5.0
|
73.0
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 5mvm
Go back to
Chlorine Binding Sites List in 5mvm
Chlorine binding site 5 out
of 5 in the X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl404
b:72.2
occ:1.00
|
N
|
E:PHE78
|
3.1
|
58.6
|
1.0
|
CB
|
E:PHE78
|
3.7
|
61.2
|
1.0
|
N
|
E:ARG85
|
3.7
|
72.7
|
1.0
|
NH1
|
E:ARG85
|
3.8
|
75.3
|
1.0
|
CD2
|
E:PHE78
|
3.8
|
66.6
|
1.0
|
CG2
|
E:VAL81
|
3.8
|
69.5
|
1.0
|
O
|
E:PHE78
|
3.9
|
65.5
|
1.0
|
CA
|
E:PHE78
|
3.9
|
59.0
|
1.0
|
CA
|
E:ALA84
|
3.9
|
79.1
|
1.0
|
CA
|
E:ARG77
|
3.9
|
55.7
|
1.0
|
C
|
E:ARG77
|
3.9
|
61.1
|
1.0
|
CG
|
E:ARG85
|
4.1
|
64.5
|
1.0
|
CB
|
E:ARG77
|
4.2
|
56.5
|
1.0
|
CB
|
E:ALA84
|
4.2
|
80.5
|
1.0
|
CG
|
E:PHE78
|
4.3
|
64.3
|
1.0
|
C
|
E:ALA84
|
4.4
|
80.6
|
1.0
|
C
|
E:PHE78
|
4.4
|
64.6
|
1.0
|
CB
|
E:ARG85
|
4.5
|
62.8
|
1.0
|
CA
|
E:ARG85
|
4.8
|
70.1
|
1.0
|
CD
|
E:ARG85
|
4.9
|
69.5
|
1.0
|
CE2
|
E:PHE78
|
4.9
|
68.4
|
1.0
|
CZ
|
E:ARG85
|
4.9
|
87.1
|
1.0
|
|
Reference:
Z.Fourati,
M.Delarue.
X-Ray Structure of the F14'A -N15'A Double Mutant of Glic in Complex with Propofol To Be Published.
Page generated: Fri Jul 26 12:57:51 2024
|