Atomistry » Chlorine » PDB 5mzc-5n6s » 5n04
Atomistry »
  Chlorine »
    PDB 5mzc-5n6s »
      5n04 »

Chlorine in PDB 5n04: X-Ray Crystal Structure of An Lpmo

Protein crystallography data

The structure of X-Ray Crystal Structure of An Lpmo, PDB code: 5n04 was solved by K.E.H.Frandsen, J.-C.N.Poulsen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 88.62 / 1.76
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.330, 125.330, 125.330, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 18.7

Other elements in 5n04:

The structure of X-Ray Crystal Structure of An Lpmo also contains other interesting chemical elements:

Copper (Cu) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of An Lpmo (pdb code 5n04). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the X-Ray Crystal Structure of An Lpmo, PDB code: 5n04:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 1 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:19.7
occ:1.00
 O A:HOH433 2.9 34.2 1.0
N A:LYS32 3.1 11.2 1.0
O A:HOH762 3.3 29.8 1.0
N A:ASN33 3.3 11.2 1.0
CB A:ASN33 3.7 11.8 1.0
CA A:LYS32 4.0 11.9 1.0
CA A:VAL31 4.0 10.5 1.0
C A:VAL31 4.0 11.2 1.0
C A:LYS32 4.1 11.4 1.0
CG1 A:VAL31 4.1 10.7 1.0
CA A:ASN33 4.2 11.8 1.0
CB A:LYS32 4.3 12.8 1.0
O A:HOH764 4.3 36.5 1.0
O A:HOH628 4.4 32.3 1.0
OH A:TYR153 4.6 15.6 1.0
O A:HOH453 4.6 31.8 1.0
CB A:VAL31 4.6 11.0 1.0
O A:PRO30 4.7 11.9 1.0
CZ A:TYR153 4.7 13.9 1.0
O A:HOH509 4.9 17.8 1.0
CG A:LYS32 5.0 13.4 1.0

Chlorine binding site 2 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 2 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:20.4
occ:1.00
 O A:HOH761 3.2 45.5 1.0
NH2 A:ARG117 3.2 16.9 0.5
O A:HOH463 3.2 29.0 1.0
N A:GLN228 3.2 15.8 1.0
O A:HOH481 3.5 22.7 0.5
NH1 A:ARG117 3.5 16.9 0.5
CA A:ALA121 3.6 15.2 1.0
O A:HOH455 3.7 27.0 1.0
CZ A:ARG117 3.8 16.7 0.5
CA A:ALA227 3.8 15.3 1.0
CB A:ALA121 3.8 15.4 1.0
CB A:GLN228 3.9 16.8 1.0
O A:THR120 4.0 15.9 1.0
C A:ALA227 4.0 14.8 1.0
N A:ALA121 4.1 15.5 1.0
CA A:GLN228 4.2 15.7 1.0
C A:THR120 4.3 16.5 1.0
CB A:ALA227 4.4 16.1 1.0
CG2 A:THR120 4.5 18.8 1.0
C A:ALA121 4.8 14.6 1.0
N A:ALA227 5.0 14.2 1.0
O A:GLN228 5.0 15.9 1.0
O A:HOH782 5.0 40.9 1.0

Chlorine binding site 3 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 3 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:18.9
occ:1.00
 O A:HOH565 3.1 36.9 1.0
O A:HOH750 3.1 15.4 1.0
N A:ASP16 3.2 12.0 1.0
CA A:GLY15 3.5 13.0 1.0
CH2 A:TRP5 3.8 15.3 0.8
C A:GLY15 3.9 12.7 1.0
CZ2 A:TRP5 4.0 15.4 0.8
CB A:ASP16 4.0 11.7 1.0
CA A:ASP16 4.2 11.9 1.0
O A:HOH694 4.4 43.7 1.0
O A:HOH727 4.7 32.9 1.0
N A:GLY15 4.8 12.2 1.0
O A:HOH533 4.9 17.7 1.0
O A:HOH450 4.9 12.5 1.0
CZ3 A:TRP5 5.0 16.1 0.8

Chlorine binding site 4 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 4 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:30.7
occ:1.00
 ND1 A:HIS131 2.9 37.6 1.0
O A:HOH548 3.1 24.7 1.0
CE1 A:HIS131 3.3 33.5 1.0
O A:HOH627 3.3 51.5 1.0
N A:ASP176 3.3 18.9 1.0
CG A:ASP176 3.5 28.2 1.0
OD2 A:ASP176 3.6 27.0 1.0
OD1 A:ASP176 3.7 27.8 1.0
CA A:SER175 3.8 16.7 1.0
CB A:ASP176 3.9 24.9 1.0
CB A:ALA56 4.0 14.3 1.0
C A:SER175 4.1 18.6 1.0
CA A:ASP176 4.2 24.4 1.0
CG A:HIS131 4.2 27.9 1.0
O A:HOH563 4.5 18.5 1.0
OG A:SER175 4.5 16.2 1.0
NE2 A:HIS131 4.5 34.7 1.0
O A:HOH408 4.6 43.2 1.0
N A:SER175 4.7 15.8 1.0
CB A:SER175 4.7 16.3 1.0
O A:HOH748 4.8 21.0 1.0
O A:SER174 4.9 16.5 1.0
CB A:HIS131 4.9 23.0 1.0

Chlorine binding site 5 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 5 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:16.5
occ:0.50
 CD2 A:HIS78 0.9 18.2 0.5
NE2 A:HIS78 0.9 18.3 0.5
CG A:HIS78 2.1 18.3 0.5
CE1 A:HIS78 2.1 19.5 0.5
CU A:CU301 2.3 17.8 1.0
ND1 A:HIS78 2.5 19.1 0.5
ND1 A:HIS78 2.8 19.5 0.5
N A:HIC1 3.2 14.3 1.0
OH A:TYR164 3.2 12.1 1.0
CB A:HIS78 3.4 18.5 0.5
O A:HOH626 3.4 22.3 0.5
OE1 A:GLN162 3.6 16.0 1.0
CG A:HIS78 3.6 19.0 0.5
CE1 A:HIS147 3.6 21.5 1.0
CB A:HIS78 3.7 19.0 0.5
CZ A:TYR164 3.7 11.9 1.0
CE2 A:TYR164 3.7 11.5 1.0
CE1 A:HIS78 3.8 19.4 0.5
CB A:ALA145 3.8 13.1 1.0
ND1 A:HIC1 4.2 14.6 1.0
CG1 A:ILE74 4.2 19.5 1.0
CD1 A:ILE74 4.3 19.5 1.0
O A:HOH683 4.3 37.5 1.0
NE2 A:HIS147 4.3 21.9 1.0
CA A:HIS78 4.4 18.5 0.5
ND1 A:HIS147 4.5 20.0 1.0
CA A:HIC1 4.6 13.4 1.0
O A:HOH623 4.6 15.2 1.0
CD A:GLN162 4.8 15.9 1.0
CD2 A:HIS78 4.8 19.0 0.5
CD2 A:TYR164 4.8 11.8 1.0
CE1 A:TYR164 4.8 11.4 1.0
NE2 A:HIS78 4.9 19.5 0.5
O A:HOH626 4.9 18.8 0.5
N A:HIS78 5.0 19.2 0.5

Chlorine binding site 6 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 6 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:27.7
occ:0.50
 CL A:CL308 0.0 27.7 0.5
CL A:CL308 1.7 38.9 0.5
CZ3 A:TRP5 2.1 12.1 0.2
O A:HOH553 2.3 21.7 0.5
CH2 A:TRP5 2.3 12.1 0.2
N A:ARG69 3.3 16.0 1.0
CE3 A:TRP5 3.4 11.9 0.2
O A:HOH618 3.5 20.1 0.8
O A:HOH670 3.6 30.9 1.0
CZ2 A:TRP5 3.7 12.3 0.2
NH2 A:ARG18 3.7 14.5 1.0
CA A:THR68 3.8 16.9 1.0
NH1 A:ARG18 3.8 16.3 1.0
C A:THR68 4.0 15.5 1.0
CB A:ARG69 4.1 15.2 1.0
CZ A:ARG18 4.1 14.5 1.0
CB A:THR68 4.2 19.5 1.0
O A:HOH778 4.3 23.1 0.5
CA A:ARG69 4.3 15.2 1.0
CD1 A:TRP5 4.4 14.1 0.8
CD2 A:TRP5 4.5 11.8 0.2
NE1 A:TRP5 4.5 14.7 0.8
CE2 A:TRP5 4.6 12.0 0.2
O A:ASN67 4.7 16.0 1.0
CG2 A:THR68 4.7 22.6 1.0
CE2 A:TYR65 4.8 10.9 1.0
N A:THR68 5.0 15.0 1.0

Chlorine binding site 7 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 7 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:38.9
occ:0.50
 CL A:CL308 0.0 38.9 0.5
CL A:CL308 1.7 27.7 0.5
O A:HOH778 3.2 23.1 0.5
N A:ARG69 3.2 16.0 1.0
CH2 A:TRP5 3.3 12.1 0.2
CZ3 A:TRP5 3.5 12.1 0.2
CB A:THR68 3.6 19.5 1.0
O A:HOH553 3.6 21.7 0.5
O A:HOH618 3.6 20.1 0.8
CA A:THR68 3.7 16.9 1.0
O A:HOH448 3.8 36.1 1.0
CB A:ARG69 3.9 15.2 1.0
C A:THR68 3.9 15.5 1.0
CG2 A:THR68 4.1 22.6 1.0
CA A:ARG69 4.2 15.2 1.0
O A:HOH778 4.2 25.3 0.5
O A:HOH670 4.2 30.9 1.0
CZ2 A:TRP5 4.4 12.3 0.2
CE3 A:TRP5 4.7 11.9 0.2
OG1 A:THR68 4.8 21.8 1.0

Chlorine binding site 8 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 8 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:21.0
occ:0.50
 O A:HOH803 1.7 17.2 0.5
O A:HOH803 3.5 22.6 0.5
O A:LEU181 3.5 25.5 1.0
O A:HOH518 3.9 11.2 1.0
O A:HOH529 4.1 16.8 1.0
N A:LEU181 4.3 23.8 1.0
C A:LEU181 4.5 22.0 1.0
CB A:LEU181 4.5 24.0 1.0
CA A:LEU181 4.7 25.3 1.0
CB A:PRO180 4.9 27.1 1.0

Chlorine binding site 9 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 9 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl310

b:25.6
occ:1.00
 NH1 A:ARG159 3.2 13.9 1.0
O A:HOH673 3.3 27.1 1.0
CD1 A:ILE158 3.3 16.3 0.5
CD A:ARG159 3.5 13.0 1.0
CG A:ARG159 3.6 12.8 1.0
CZ A:ARG159 4.2 13.9 1.0
NE A:ARG159 4.3 13.7 1.0
CG1 A:ILE158 4.6 15.4 0.5
CD1 A:ILE158 4.6 12.7 0.5
CG1 A:ILE158 4.7 12.5 0.5
O A:ILE158 4.9 13.5 1.0

Chlorine binding site 10 out of 12 in 5n04

Go back to Chlorine Binding Sites List in 5n04
Chlorine binding site 10 out of 12 in the X-Ray Crystal Structure of An Lpmo


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of X-Ray Crystal Structure of An Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl311

b:20.3
occ:0.50
 O A:HOH734 1.1 22.3 0.5
O A:HOH714 1.5 24.8 0.5
O A:HOH461 3.3 21.5 0.5
O A:HOH442 3.5 28.5 1.0
CA A:GLY189 3.6 17.4 1.0
N A:GLY189 3.7 15.7 1.0
CA A:THR35 3.8 15.7 1.0
CG2 A:THR35 3.8 19.6 1.0
CB A:THR35 3.9 17.8 1.0
CB A:PRO188 4.0 14.4 1.0
C A:PRO188 4.0 15.7 1.0
O A:HOH476 4.1 35.3 1.0
O A:LEU34 4.3 13.3 1.0
O A:HOH547 4.3 36.0 1.0
O A:PRO188 4.3 16.5 1.0
O A:THR35 4.5 16.1 1.0
CG A:PRO188 4.6 15.1 1.0
C A:THR35 4.6 15.3 1.0
CA A:PRO188 4.6 14.4 1.0
N A:THR35 4.8 14.7 1.0
C A:GLY189 4.8 18.5 1.0
O A:HOH492 4.8 15.7 1.0
C A:LEU34 4.9 14.4 1.0

Reference:

K.E.H.Frandsen, J.N.Poulsen, T.Tandrup, L.Lo Leggio. Unliganded and Substrate Bound Structures of the Cellooligosaccharide Active Lytic Polysaccharide Monooxygenase LSAA9A at Low pH. Carbohydr. Res. V. 448 187 2017.
ISSN: ISSN 1873-426X
PubMed: 28364950
DOI: 10.1016/J.CARRES.2017.03.010
Page generated: Fri Jul 26 13:05:30 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy