Atomistry » Chlorine » PDB 5myy-5n6q » 5n0r
Atomistry »
  Chlorine »
    PDB 5myy-5n6q »
      5n0r »

Chlorine in PDB 5n0r: Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam

Protein crystallography data

The structure of Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam, PDB code: 5n0r was solved by H.Song, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.68 / 1.61
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 86.652, 93.355, 165.355, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 19.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam (pdb code 5n0r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam, PDB code: 5n0r:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5n0r

Go back to Chlorine Binding Sites List in 5n0r
Chlorine binding site 1 out of 2 in the Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl507

b:45.7
occ:1.00
O A:HOH865 3.1 54.0 1.0
NE2 A:GLN78 3.7 30.8 1.0
CB A:ASN74 3.9 34.5 1.0
ND2 A:ASN74 3.9 37.9 1.0
CE A:LYS70 4.1 37.5 1.0
CG A:ASN74 4.2 36.2 1.0
CD A:GLN78 4.5 29.8 1.0
O A:HOH845 4.6 50.3 1.0
NZ A:LYS70 4.7 36.6 1.0
CG A:LYS70 4.9 39.6 1.0
CD A:LYS70 4.9 38.5 1.0
OE1 A:GLN78 5.0 29.9 1.0

Chlorine binding site 2 out of 2 in 5n0r

Go back to Chlorine Binding Sites List in 5n0r
Chlorine binding site 2 out of 2 in the Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Opha-DELTAC6 Mutant Y66F in Complex with Sam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:38.9
occ:1.00
NE2 A:GLN28 2.7 22.9 1.0
OG1 A:THR26 2.7 22.7 1.0
O A:PRO126 2.8 23.3 1.0
CG A:GLN28 3.3 24.9 1.0
CD A:GLN28 3.5 25.7 1.0
CB A:THR26 3.5 22.4 1.0
CG2 A:THR26 3.5 22.8 1.0
O A:HOH731 3.5 23.3 1.0
C A:PRO126 4.0 22.3 1.0
CB A:LEU125 4.1 24.0 1.0
N A:PRO126 4.3 22.3 1.0
CD A:PRO126 4.4 22.5 1.0
O A:HOH703 4.4 22.7 1.0
CG A:PRO126 4.5 22.1 1.0
C A:LEU125 4.5 23.1 1.0
OE1 A:GLN28 4.7 29.2 1.0
N A:ALA29 4.7 23.7 1.0
CA A:PRO126 4.7 22.1 1.0
CB A:GLN28 4.8 24.7 1.0
CA A:LEU125 4.8 23.2 1.0
O A:LEU125 4.9 22.7 1.0
CA A:THR26 4.9 22.6 1.0
N A:GLY127 5.0 21.5 1.0

Reference:

H.Song, N.S.Van Der Velden, S.L.Shiran, P.Bleiziffer, C.Zach, R.Sieber, A.S.Imani, F.Krausbeck, M.Aebi, M.F.Freeman, S.Riniker, M.Kunzler, J.H.Naismith. A Molecular Mechanism For the Enzymatic Methylation of Nitrogen Atoms Within Peptide Bonds. Sci Adv V. 4 T2720 2018.
ISSN: ESSN 2375-2548
PubMed: 30151425
DOI: 10.1126/SCIADV.AAT2720
Page generated: Sat Dec 12 12:08:14 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy