Chlorine in PDB 5n2w: Wt-Parkin and Pub Complex

The structure of Wt-Parkin and Pub Complex, PDB code: 5n2w was solved by A.Kumar, V.K.Chaugule, C.Johnson, R.Toth, R.Sundaramoorthy, A.Knebel, H.Walden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.34 / 2.68
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	147.290, 147.290, 87.490, 90.00, 90.00, 120.00
R / Rfree (%)	19.8 / 24.3

The structure of Wt-Parkin and Pub Complex also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Chlorine atom in the Wt-Parkin and Pub Complex (pdb code 5n2w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Wt-Parkin and Pub Complex, PDB code: 5n2w:

Chlorine binding site 1 out of 1 in the Wt-Parkin and Pub Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Wt-Parkin and Pub Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl509 b:89.3 occ:1.00 O A:ALA397 2.8 55.5 1.0 OG1 A:THR237 2.9 51.1 1.0 O A:CYS238 3.0 47.3 1.0 C A:ALA397 3.6 56.7 1.0 CB A:GLN400 3.6 54.0 1.0 CA A:ALA397 3.6 54.2 1.0 N A:ALA401 3.7 49.3 1.0 CB A:THR237 3.7 49.2 1.0 O A:THR237 3.7 49.3 1.0 CG2 A:THR242 3.7 57.3 1.0 CB A:ALA401 3.7 46.0 1.0 C A:CYS238 3.8 46.4 1.0 C A:THR237 3.9 49.8 1.0 C A:GLN400 4.0 55.0 1.0 CB A:ALA397 4.0 53.8 1.0 CA A:ALA401 4.1 46.9 1.0 CB A:THR242 4.2 60.9 1.0 NH1 A:ARG396 4.2 95.0 1.0 CA A:ILE239 4.3 41.9 1.0 CA A:GLN400 4.3 52.4 1.0 CA A:THR237 4.3 47.4 1.0 N A:ILE239 4.3 42.4 1.0 N A:CYS238 4.3 44.4 1.0 CA A:THR242 4.5 51.8 1.0 O A:GLN400 4.7 55.7 1.0 N A:GLN400 4.7 53.5 1.0 CA A:CYS238 4.7 41.9 1.0 CG A:GLN400 4.8 73.9 1.0 N A:ALA398 4.8 53.3 1.0 O A:ILE239 4.9 48.5 1.0 C A:ILE239 4.9 47.4 1.0 N A:ALA397 4.9 58.5 1.0 CG2 A:THR237 5.0 44.6 1.0

A.Kumar, V.K.Chaugule, T.E.C.Condos, K.R.Barber, C.Johnson, R.Toth, R.Sundaramoorthy, A.Knebel, G.S.Shaw, H.Walden. Parkin-Phosphoubiquitin Complex Reveals Cryptic Ubiquitin-Binding Site Required For Rbr Ligase Activity. Nat. Struct. Mol. Biol. V. 24 475 2017.
ISSN: ESSN 1545-9985
PubMed: 28414322
DOI: 10.1038/NSMB.3400