Atomistry » Chlorine » PDB 5n75-5ncw » 5n9n
Atomistry »
  Chlorine »
    PDB 5n75-5ncw »
      5n9n »

Chlorine in PDB 5n9n: Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)

Enzymatic activity of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)

All present enzymatic activity of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A):
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A), PDB code: 5n9n was solved by A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklaender, B.Wuensch, C.Goetz, K.Niefind, J.Jose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.17 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.477, 45.505, 63.489, 90.00, 110.97, 90.00
R / Rfree (%) 16.7 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A) (pdb code 5n9n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A), PDB code: 5n9n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5n9n

Go back to Chlorine Binding Sites List in 5n9n
Chlorine binding site 1 out of 2 in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:34.1
occ:1.00
CL1 A:KC5401 0.0 34.1 1.0
CAR A:KC5401 1.7 25.4 1.0
CAM A:KC5401 2.7 28.8 1.0
CAT A:KC5401 2.7 22.9 1.0
OAC A:KC5401 2.9 28.6 1.0
NZ A:LYS68 3.3 27.2 1.0
CE A:LYS68 3.4 31.3 1.0
CG A:ASP175 3.5 40.4 1.0
OD2 A:ASP175 3.6 40.0 1.0
CH3 A:ACT405 3.7 63.2 1.0
CD A:LYS68 3.7 32.2 1.0
CB A:ASP175 3.8 29.4 1.0
OD1 A:ASP175 3.8 31.1 1.0
O A:HOH627 3.8 45.6 1.0
C A:ACT405 3.9 65.0 1.0
O A:HOH506 3.9 33.2 1.0
CG2 A:VAL53 3.9 30.4 1.0
CAX A:KC5401 3.9 23.7 1.0
CAV A:KC5401 4.0 29.1 1.0
OXT A:ACT405 4.1 66.4 1.0
CA A:ASP175 4.2 32.1 1.0
OG A:SER51 4.2 33.0 1.0
O A:ACT405 4.4 64.8 1.0
CBA A:KC5401 4.4 27.5 1.0
CG A:LYS68 4.5 27.1 1.0
N A:ASP175 4.7 29.6 1.0

Chlorine binding site 2 out of 2 in 5n9n

Go back to Chlorine Binding Sites List in 5n9n
Chlorine binding site 2 out of 2 in the Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Protein Kinase CK2 Catalytic Subunit in Complex with the Atp-Competitive, Tight-Binding Dibenzofuran Inhibitor TF85 (4A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:32.6
occ:1.00
CL2 A:KC5401 0.0 32.6 1.0
CAV A:KC5401 1.7 29.1 1.0
CAT A:KC5401 2.7 22.9 1.0
CBA A:KC5401 2.7 27.5 1.0
OAC A:KC5401 2.9 28.6 1.0
CAY A:KC5401 3.2 24.3 1.0
CAL A:KC5401 3.3 35.3 1.0
CB A:ILE174 3.5 32.2 1.0
CZ A:PHE113 3.6 27.9 1.0
CE1 A:PHE113 3.6 28.8 1.0
CE2 A:PHE113 3.6 31.1 1.0
CD1 A:PHE113 3.6 27.0 1.0
CD2 A:PHE113 3.6 32.3 1.0
CG A:PHE113 3.6 30.1 1.0
CG2 A:ILE174 3.7 24.9 1.0
CG1 A:ILE95 3.8 29.4 1.0
CG2 A:ILE95 3.8 25.3 1.0
O A:HOH593 3.8 24.8 1.0
CAX A:KC5401 3.9 23.7 1.0
CAR A:KC5401 4.0 25.4 1.0
N A:ASP175 4.0 29.6 1.0
CA A:ILE174 4.2 22.9 1.0
CB A:ILE95 4.3 28.6 1.0
CB A:PHE113 4.4 27.8 1.0
CAM A:KC5401 4.5 28.8 1.0
CAZ A:KC5401 4.5 24.5 1.0
CAG A:KC5401 4.6 34.6 1.0
C A:ILE174 4.7 26.1 1.0
CD1 A:ILE95 4.7 28.6 1.0
CG1 A:ILE174 4.7 23.4 1.0
OAP A:KC5401 4.8 27.2 1.0
CD1 A:ILE174 4.8 25.5 1.0
CA A:ASP175 4.9 32.1 1.0

Reference:

A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklander, B.Wunsch, C.Gotz, K.Niefind, J.Jose. A Pi-Halogen Bond of Dibenzofuranones with the Gatekeeper PHE113 in Human Protein Kinase CK2 Leads to Potent Tight Binding Inhibitors. Pharmaceuticals V. 11 2018.
ISSN: ESSN 1424-8247
PubMed: 29462988
DOI: 10.3390/PH11010023
Page generated: Fri Jul 26 13:18:45 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy