Chlorine in PDB 5naz: Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1

The structure of Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1, PDB code: 5naz was solved by P.Casino, A.Marina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.87 / 1.85
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	121.283, 121.283, 121.283, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 19

The binding sites of Chlorine atom in the Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1 (pdb code 5naz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1, PDB code: 5naz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:8.4 occ:1.00 O A:HOH416 3.1 10.9 1.0 N A:ASP78 3.3 8.5 1.0 N A:ARG76 3.3 9.1 1.0 C A:ARG76 3.4 9.3 1.0 O A:ARG76 3.5 9.9 1.0 CA A:GLY178 3.6 8.9 1.0 CA A:ALA74 3.6 8.9 1.0 C A:ALA74 3.6 9.0 1.0 N A:SER75 3.7 8.7 1.0 N A:ASN77 3.7 9.2 1.0 CA A:ARG76 3.9 9.1 1.0 CB A:ASP78 4.0 8.4 1.0 CA A:ASP78 4.1 8.2 1.0 CE A:MET60 4.1 7.9 1.0 O A:ALA74 4.2 8.9 1.0 CA A:ASN77 4.2 9.1 1.0 N A:GLY178 4.2 8.8 1.0 C A:ASN77 4.2 9.1 1.0 O A:ASP78 4.3 7.7 1.0 C A:GLY178 4.4 8.8 1.0 O A:HOH452 4.4 9.2 1.0 C A:SER75 4.4 9.2 1.0 N A:ALA74 4.5 9.1 1.0 CB A:ARG76 4.5 8.9 1.0 C A:ASP78 4.6 7.9 1.0 CA A:SER75 4.6 9.1 1.0 CB A:ALA74 4.6 8.9 1.0 CG A:ASP78 4.6 8.9 1.0 O A:HOH459 4.7 5.7 1.0 OD2 A:ASP78 4.7 9.4 1.0 CG A:MET60 4.7 7.8 1.0 SD A:MET60 4.8 8.1 1.0 N A:ARG179 4.9 8.8 1.0 O A:GLY178 5.0 8.7 1.0

Chlorine binding site 2 out of 2 in the Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structures of Homooligomers of Collagen Type IV. ALPHA5NC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:15.2 occ:1.00 N A:ALA186 3.2 7.8 1.0 O A:HOH444 3.3 14.4 1.0 CB A:ALA186 3.7 8.3 1.0 CD1 A:TYR185 3.8 7.4 1.0 CA A:TYR185 3.9 7.7 1.0 C A:TYR185 4.0 7.6 1.0 CA A:ALA186 4.1 8.1 1.0 CB A:TYR185 4.1 7.5 1.0 CG A:TYR185 4.5 7.4 1.0 CE1 A:TYR185 4.8 7.3 1.0 O A:HOH495 4.8 11.5 1.0 O A:TYR184 5.0 8.2 1.0

P.Casino, R.Gozalbo-Rovira, J.Rodriguez-Diaz, S.Banerjee, A.Boutaud, V.Rubio, B.G.Hudson, J.Saus, J.Cervera, A.Marina. Structures of Collagen IV Globular Domains: Insight Into Associated Pathologies, Folding and Network Assembly. Iucrj V. 5 765 2018.
ISSN: ESSN 2052-2525
PubMed: 30443360
DOI: 10.1107/S2052252518012459