Chlorine in PDB 5ncf: Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh
Protein crystallography data
The structure of Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh, PDB code: 5ncf
was solved by
M.Barone,
Y.Roske,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.56 /
1.40
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
34.715,
43.364,
44.181,
60.97,
84.19,
84.16
|
R / Rfree (%)
|
21.9 /
25.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh
(pdb code 5ncf). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh, PDB code: 5ncf:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 5ncf
Go back to
Chlorine Binding Sites List in 5ncf
Chlorine binding site 1 out
of 2 in the Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:19.9
occ:1.00
|
CL
|
A:8T5201
|
0.0
|
19.9
|
1.0
|
C15
|
A:8T5201
|
1.7
|
15.1
|
1.0
|
C19
|
A:8T5201
|
2.7
|
15.6
|
1.0
|
C14
|
A:8T5201
|
2.7
|
14.8
|
1.0
|
H2A
|
A:8T5201
|
2.7
|
21.3
|
1.0
|
HG3
|
A:ARG81
|
2.8
|
26.5
|
1.0
|
H12
|
A:8T5201
|
2.8
|
23.2
|
1.0
|
H19
|
A:8T5201
|
2.8
|
18.7
|
1.0
|
C13
|
A:8T5201
|
3.0
|
17.8
|
1.0
|
HG13
|
A:VAL86
|
3.1
|
16.0
|
1.0
|
HD3
|
A:ARG81
|
3.2
|
31.2
|
1.0
|
HG2
|
A:ARG81
|
3.2
|
26.5
|
1.0
|
HG3
|
A:GLN79
|
3.3
|
22.3
|
1.0
|
CG
|
A:ARG81
|
3.3
|
22.1
|
1.0
|
HB2
|
A:GLN79
|
3.4
|
21.5
|
1.0
|
C12
|
A:8T5201
|
3.4
|
19.4
|
1.0
|
HG11
|
A:VAL86
|
3.5
|
16.0
|
1.0
|
H36
|
A:8T5201
|
3.5
|
24.9
|
1.0
|
HA
|
A:TRP80
|
3.6
|
15.3
|
1.0
|
H30
|
A:8T5201
|
3.6
|
24.9
|
1.0
|
OE1
|
A:GLN79
|
3.7
|
25.1
|
1.0
|
CG1
|
A:VAL86
|
3.7
|
13.3
|
1.0
|
CD
|
A:ARG81
|
3.8
|
26.0
|
1.0
|
CD
|
A:GLN79
|
3.8
|
19.8
|
1.0
|
CG
|
A:GLN79
|
3.8
|
18.6
|
1.0
|
C30
|
A:8T5201
|
3.9
|
20.7
|
1.0
|
HG12
|
A:VAL86
|
3.9
|
16.0
|
1.0
|
C16
|
A:8T5201
|
4.0
|
12.5
|
1.0
|
C18
|
A:8T5201
|
4.0
|
14.5
|
1.0
|
N
|
A:TRP80
|
4.0
|
11.0
|
1.0
|
C
|
A:TRP80
|
4.1
|
14.1
|
1.0
|
H13
|
A:8T5201
|
4.1
|
21.3
|
1.0
|
CB
|
A:GLN79
|
4.1
|
17.9
|
1.0
|
CA
|
A:TRP80
|
4.1
|
12.8
|
1.0
|
H
|
A:TRP80
|
4.2
|
13.2
|
1.0
|
C
|
A:GLN79
|
4.3
|
11.2
|
1.0
|
HB3
|
A:ASN71
|
4.3
|
15.3
|
1.0
|
O
|
A:TRP80
|
4.3
|
12.7
|
1.0
|
C11
|
A:8T5201
|
4.4
|
23.5
|
1.0
|
C17
|
A:8T5201
|
4.4
|
14.1
|
1.0
|
N5
|
A:8T5201
|
4.5
|
24.7
|
1.0
|
O5
|
A:8T5201
|
4.5
|
25.8
|
1.0
|
HD2
|
A:ARG81
|
4.5
|
31.2
|
1.0
|
N
|
A:ARG81
|
4.5
|
13.5
|
1.0
|
HH11
|
A:ARG81
|
4.5
|
30.7
|
1.0
|
N4
|
A:8T5201
|
4.5
|
19.7
|
1.0
|
O
|
A:GLN79
|
4.5
|
12.8
|
1.0
|
NE2
|
A:GLN79
|
4.5
|
20.6
|
1.0
|
HB2
|
A:ASN71
|
4.6
|
15.3
|
1.0
|
NE
|
A:ARG81
|
4.6
|
28.1
|
1.0
|
CB
|
A:ARG81
|
4.7
|
18.6
|
1.0
|
H
|
A:ARG81
|
4.7
|
16.2
|
1.0
|
HG2
|
A:GLN79
|
4.8
|
22.3
|
1.0
|
HB3
|
A:GLN79
|
4.8
|
21.5
|
1.0
|
H18
|
A:8T5201
|
4.8
|
17.4
|
1.0
|
CA
|
A:GLN79
|
4.8
|
11.6
|
1.0
|
H16
|
A:8T5201
|
4.8
|
15.0
|
1.0
|
C32
|
A:8T5201
|
4.9
|
23.7
|
1.0
|
HE22
|
A:GLN79
|
4.9
|
24.7
|
1.0
|
HG22
|
A:VAL86
|
4.9
|
14.6
|
1.0
|
CB
|
A:ASN71
|
4.9
|
12.8
|
1.0
|
HE21
|
A:GLN79
|
4.9
|
24.7
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 5ncf
Go back to
Chlorine Binding Sites List in 5ncf
Chlorine binding site 2 out
of 2 in the Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Enah EVH1 in Complex with Ac-[2-Cl-F]-[Prom-2]-[Prom-4]-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl204
b:22.4
occ:1.00
|
CL
|
B:8T5204
|
0.0
|
22.4
|
1.0
|
C15
|
B:8T5204
|
1.8
|
17.1
|
1.0
|
H2A
|
B:8T5204
|
2.6
|
25.4
|
1.0
|
C14
|
B:8T5204
|
2.7
|
18.6
|
1.0
|
C19
|
B:8T5204
|
2.7
|
17.4
|
1.0
|
HG13
|
B:VAL86
|
2.8
|
20.5
|
1.0
|
HG3
|
B:ARG81
|
2.8
|
27.2
|
1.0
|
H30
|
B:8T5204
|
2.8
|
25.5
|
1.0
|
H12
|
B:8T5204
|
2.9
|
29.2
|
1.0
|
H19
|
B:8T5204
|
2.9
|
20.9
|
1.0
|
C13
|
B:8T5204
|
3.0
|
21.2
|
1.0
|
HG2
|
B:ARG81
|
3.2
|
27.2
|
1.0
|
HG3
|
B:GLN79
|
3.3
|
24.5
|
1.0
|
HG11
|
B:VAL86
|
3.3
|
20.5
|
1.0
|
CG
|
B:ARG81
|
3.4
|
22.6
|
1.0
|
CG1
|
B:VAL86
|
3.4
|
17.1
|
1.0
|
HB2
|
B:GLN79
|
3.5
|
21.8
|
1.0
|
C12
|
B:8T5204
|
3.5
|
24.4
|
1.0
|
HD3
|
B:ARG81
|
3.5
|
33.0
|
1.0
|
HA
|
B:TRP80
|
3.6
|
20.2
|
1.0
|
HG12
|
B:VAL86
|
3.7
|
20.5
|
1.0
|
OE1
|
B:GLN79
|
3.8
|
25.9
|
1.0
|
C30
|
B:8T5204
|
3.9
|
21.2
|
1.0
|
CG
|
B:GLN79
|
3.9
|
20.4
|
1.0
|
CD
|
B:GLN79
|
3.9
|
23.7
|
1.0
|
CD
|
B:ARG81
|
4.0
|
27.5
|
1.0
|
C16
|
B:8T5204
|
4.0
|
19.4
|
1.0
|
C18
|
B:8T5204
|
4.0
|
15.8
|
1.0
|
C
|
B:TRP80
|
4.1
|
18.1
|
1.0
|
H13
|
B:8T5204
|
4.1
|
25.4
|
1.0
|
O5
|
B:8T5204
|
4.1
|
28.6
|
1.0
|
N
|
B:TRP80
|
4.1
|
15.1
|
1.0
|
CA
|
B:TRP80
|
4.1
|
16.8
|
1.0
|
CB
|
B:GLN79
|
4.1
|
18.2
|
1.0
|
HH11
|
B:ARG81
|
4.2
|
28.6
|
1.0
|
H36
|
B:8T5204
|
4.2
|
25.5
|
1.0
|
O
|
B:TRP80
|
4.3
|
14.9
|
1.0
|
C
|
B:GLN79
|
4.3
|
17.0
|
1.0
|
H
|
B:TRP80
|
4.3
|
18.2
|
1.0
|
N
|
B:ARG81
|
4.5
|
16.8
|
1.0
|
HB3
|
B:ASN71
|
4.5
|
16.8
|
1.0
|
N4
|
B:8T5204
|
4.5
|
27.8
|
1.0
|
C11
|
B:8T5204
|
4.5
|
25.3
|
1.0
|
C17
|
B:8T5204
|
4.5
|
17.3
|
1.0
|
HG22
|
B:VAL86
|
4.5
|
19.0
|
1.0
|
N5
|
B:8T5204
|
4.5
|
24.1
|
1.0
|
O
|
B:GLN79
|
4.6
|
13.9
|
1.0
|
HD2
|
B:ARG81
|
4.6
|
33.0
|
1.0
|
C32
|
B:8T5204
|
4.7
|
30.8
|
1.0
|
CB
|
B:ARG81
|
4.7
|
18.2
|
1.0
|
CB
|
B:VAL86
|
4.7
|
15.3
|
1.0
|
H
|
B:ARG81
|
4.7
|
20.1
|
1.0
|
NE2
|
B:GLN79
|
4.8
|
25.4
|
1.0
|
HG2
|
B:GLN79
|
4.8
|
24.5
|
1.0
|
HG21
|
B:VAL86
|
4.8
|
19.0
|
1.0
|
NH1
|
B:ARG81
|
4.8
|
23.8
|
1.0
|
HB3
|
B:GLN79
|
4.9
|
21.8
|
1.0
|
H16
|
B:8T5204
|
4.9
|
23.3
|
1.0
|
HB2
|
B:ASN71
|
4.9
|
16.8
|
1.0
|
H18
|
B:8T5204
|
4.9
|
18.9
|
1.0
|
C29
|
B:8T5204
|
4.9
|
20.7
|
1.0
|
CA
|
B:GLN79
|
4.9
|
15.7
|
1.0
|
CG2
|
B:VAL86
|
4.9
|
15.8
|
1.0
|
NE
|
B:ARG81
|
4.9
|
31.7
|
1.0
|
H29
|
B:8T5204
|
5.0
|
24.9
|
1.0
|
HA
|
B:VAL86
|
5.0
|
16.6
|
1.0
|
|
Reference:
R.Opitz,
M.Muller,
C.Reuter,
M.Barone,
A.Soicke,
Y.Roske,
K.Piotukh,
P.Huy,
M.Beerbaum,
B.Wiesner,
M.Beyermann,
P.Schmieder,
C.Freund,
R.Volkmer,
H.Oschkinat,
H.G.Schmalz,
R.Kuhne.
A Modular Toolkit to Inhibit Proline-Rich Motif-Mediated Protein-Protein Interactions. Proc. Natl. Acad. Sci. V. 112 5011 2015U.S.A..
ISSN: ESSN 1091-6490
PubMed: 25848013
DOI: 10.1073/PNAS.1422054112
Page generated: Fri Jul 26 13:25:15 2024
|