Atomistry » Chlorine » PDB 5ncv-5nkb » 5ne0
Atomistry »
  Chlorine »
    PDB 5ncv-5nkb »
      5ne0 »

Chlorine in PDB 5ne0: Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes

Enzymatic activity of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes

All present enzymatic activity of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes:
3.2.1.17;

Protein crystallography data

The structure of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes, PDB code: 5ne0 was solved by I.Martiel, N.Opara, S.A.Arnold, T.Braun, H.Stahlberg, M.Makita, C.David, C.Padeste, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.75 / 1.57
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.500, 79.500, 37.810, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.4

Other elements in 5ne0:

The structure of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes (pdb code 5ne0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes, PDB code: 5ne0:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5ne0

Go back to Chlorine Binding Sites List in 5ne0
Chlorine binding site 1 out of 4 in the Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:33.5
occ:1.00
 OH A:TYR23 3.0 23.3 1.0
CZ A:TYR23 3.7 24.8 1.0
CE1 A:TYR23 3.7 22.3 1.0
CA A:GLY104 4.1 21.4 1.0
O A:HOH314 4.6 39.9 1.0
O A:ARG21 4.7 29.6 1.0
N A:GLY104 4.7 23.9 1.0
CE2 A:TYR23 4.9 21.2 1.0
CD1 A:TYR23 5.0 21.8 1.0

Chlorine binding site 2 out of 4 in 5ne0

Go back to Chlorine Binding Sites List in 5ne0
Chlorine binding site 2 out of 4 in the Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:43.4
occ:1.00
 OG A:SER24 2.9 30.7 1.0
N A:GLY26 3.1 21.7 1.0
CB A:SER24 3.4 29.6 1.0
CA A:GLY26 3.5 21.2 1.0
CA A:GLN121 3.8 27.9 1.0
CD1 A:ILE124 3.9 44.2 1.0
N A:LEU25 4.0 24.0 1.0
CB A:GLN121 4.1 33.9 1.0
N A:GLN121 4.1 31.6 1.0
C A:SER24 4.2 25.0 1.0
C A:LEU25 4.3 25.9 1.0
CG1 A:ILE124 4.4 31.8 1.0
O A:VAL120 4.4 29.4 1.0
CA A:SER24 4.4 26.0 1.0
C A:VAL120 4.4 31.0 1.0
CG2 A:VAL120 4.5 29.8 1.0
CA A:LEU25 4.6 23.4 1.0
C A:GLY26 4.6 20.8 1.0
O A:SER24 4.7 25.1 1.0
N A:ASN27 4.8 18.8 1.0
CB A:LEU25 4.9 25.6 1.0
C A:GLN121 5.0 29.6 1.0

Chlorine binding site 3 out of 4 in 5ne0

Go back to Chlorine Binding Sites List in 5ne0
Chlorine binding site 3 out of 4 in the Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:35.1
occ:0.56
 CL A:CL203 0.0 35.1 0.6
CL A:CL203 1.9 47.0 0.4
N A:ASN59 3.0 21.4 1.0
CB A:ASN59 3.5 27.2 1.0
CA A:ILE58 3.6 19.7 1.0
CD1 A:TRP63 3.6 25.8 1.0
O A:HOH365 3.7 52.5 1.0
O A:GLN57 3.7 23.8 1.0
C A:ILE58 3.8 23.4 1.0
NE1 A:TRP63 3.8 26.1 1.0
CA A:ASN59 3.9 22.9 1.0
CD1 A:ILE98 4.4 25.2 1.0
CB A:ILE58 4.5 21.6 1.0
CG2 A:ILE58 4.5 25.9 1.0
C A:GLN57 4.5 20.6 1.0
N A:ILE58 4.5 19.6 1.0
CG1 A:ILE58 4.7 24.9 1.0
CG A:TRP63 4.7 25.1 1.0
O A:ASN59 4.9 25.6 1.0
CG A:ASN59 4.9 33.1 1.0
C A:ASN59 5.0 23.4 1.0
O A:ILE58 5.0 21.5 1.0

Chlorine binding site 4 out of 4 in 5ne0

Go back to Chlorine Binding Sites List in 5ne0
Chlorine binding site 4 out of 4 in the Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Room Temperature in-Situ Structure of Hen Egg-White Lysozyme From Crystals Enclosed Between Ultrathin Silicon Nitride Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:47.0
occ:0.44
 CL A:CL203 0.0 47.0 0.4
CL A:CL203 1.9 35.1 0.6
O A:ALA107 3.6 28.1 1.0
NE1 A:TRP108 3.8 22.3 1.0
O A:HOH365 3.8 52.5 1.0
CD1 A:TRP108 4.0 21.9 1.0
CE2 A:TRP108 4.1 22.5 1.0
O A:GLN57 4.2 23.8 1.0
C A:ALA107 4.2 28.4 1.0
CG A:TRP108 4.4 20.4 1.0
O A:HOH335 4.4 36.8 1.0
CD2 A:TRP108 4.5 19.5 1.0
CB A:ALA107 4.5 24.4 1.0
CG2 A:ILE98 4.6 26.4 1.0
CD1 A:ILE98 4.6 25.2 1.0
CA A:ILE58 4.7 19.7 1.0
CZ2 A:TRP108 4.7 23.3 1.0
N A:TRP108 4.8 20.6 1.0
NE1 A:TRP63 4.8 26.1 1.0
CA A:TRP108 4.8 19.3 1.0
N A:ASN59 4.8 21.4 1.0
O A:LEU56 5.0 23.0 1.0

Reference:

N.Opara, I.Martiel, S.A.Arnold, T.Braun, H.Stahlberg, M.Makita, C.David, C.Padeste. Direct Protein Crystallization on Ultrathin Membranes For Diffraction Measurements at X-Ray Free-Electron Lasers. J.Appl.Crystallogr. V. 50 909 2017.
ISSN: ISSN 0021-8898
DOI: 10.1107/S1600576717005799
Page generated: Sat Dec 12 12:09:20 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy